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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAGGAAGCCAGCACGCCATGGTGTTTTGGGGATTCCTGGTTACGTTCAGTTTACATCCCCCATCCGTAGATATTTGGATCTTCTTGCTCATTATCAGgtaagtcattttcaattttataatttgcagttataatagattgcagaaggtgatgcttgctatgaaactcttatttttaaaatctgcaagaatcagcaaa...

Basic information

species Glycine max
transcript GLYMA18G25560.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G25560.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g62440.1 (Oryza sativa), 5'ss of exon 12
TTTCAGGAAGCCAGCACGCCATGGTGTTTTGGGGATTCCTGGTTACGTTCAGTTTACATCCCCCATCCGTAGATATTTGGATCTTCTTGCTCATTATCAGgtaagt----cattttcaatttta-taatttgcag--ttataatagattgcagaag-gtgatgcttgctat-----gaaactcttatttttaaaatctgcaagaatcagcaaa
||||   || || | ||  ||||||||  | || ||||||||||| || ||||| || ||||| || || |||||| | ||||| || |||||||||||||||| |    |  | | | |  |  ||||  | ||   | ||| || || ||| |   ||||| || | ||      | |   ||  | |||  |  | |             
TTTCCAAAAACCTGTACCACATGGTGTCCTCGGTATTCCTGGTTATGTACAGTTCACCTCCCCTATTCGAAGATATGTTGATCTGCTAGCTCATTATCAGgtaaatatgcctctgttattcctgctaatagggagaactttaacagtttccaggaacatgatggttacaatttacaaagagctttcctattatcaatttc-------------

upper sequence: GLYMA18G25560.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G082260_T02 (Zea mays), 5'ss of exon 11
TTTCAGGAAGCCAGCACGCCATGGTGTTTTGGGGATTCCTGGTTACGTTCAGTTTACATCCCCCATCCGTAGATATTTGGATCTTCTTGCTCATTATCAGgtaagtcattttcaattttataatttgcagttataatagattgcagaaggtgatgcttgctatgaaactcttatttttaaaa---tctgcaagaatcagcaaa------------------------------------------------------------------------------------
|||    || || | ||  ||||||||  | || |||||||||||||| ||||| || || || ||||| |||||| | || || || |||||||||||||||| | ||  | |    ||          |||||  | || | | ||   ||   |    ||   | | | || ||   |    ||||  ||  ||| ||||                                                                                    
TTTTCAAAAACCTGTACCACATGGTGTACTTGGTATTCCTGGTTACGTGCAGTTCACCTCTCCTATCCGAAGATATGTTGACCTGCTAGCTCATTATCAGgtaaat-atgcttatgaataaggaaaagttttatagcatatgggaaaataagaatttgtgcattttattttgatgttgctagctttctgatagtgtcatcaaattcattatttaacctatgtacctttgatccaaagagtatatcaacaatcaacttaatttcaaatattatgggaactaattgtag

upper sequence: GLYMA18G25560.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G02250.1 (Arabidopsis thaliana), 5'ss of exon 12
TTTCAGGAAGCCAGCACGCCATGGTGTTTTGGGGATTCCTGGTTACGTTCAGTTTACATCCCCCATCCGTAGATATTTGGATCTTCTTGCTCATTATCAGgtaagtcattttca--attttataatttgcagtta----------taatagattgcagaaggtgat--gcttg-----ctatgaaactcttatttttaaaatctgcaagaatcagcaaa---------------------------------------------------
||||||    || |  || ||||| ||  | || |||||||||||||||||||| || || ||||| ||| ||||  ||||||||  ||| || ||||||||||    ||||||  || ||   ||||  | ||           | || |  |  |     ||||    |||     | |||     | || || |    |||||   |  |  ||                                                     
TTTCAGATGTCCTGTTCGACATGGAGTGCTTGGAATTCCTGGTTACGTTCAGTTCACGTCTCCCATTCGTCGATACATGGATCTTACTGCACACTATCAGgtaaacatttttcaccatcttgcgatttagatttgactctttttgttattgtcttaattgattgatctatttggatatcgatggggtacatacttgtgctttctgccttatccttcatttgaacattcaccatatcaataagttggcaaagcgtgttgtttgaattacag

upper sequence: GLYMA18G25560.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv08s0007g00460.t01 (Vitis vinifera), 5'ss of exon 12
TTTCAGGAAGCCAGCACGCCATGGTGTTTTGGGGATTCCTGGTTACGTTCAGTTTACATCCCCCATCCGTAGATATTTGGATCTTCTTGCTCATTATCAGgtaagtcattttcaatttta-taatttgcagttataatagattgcagaaggtgatgcttgctatgaaactcttatttttaaaatctgcaagaatcagcaaa
||| ||||||||   ||||||||| ||||| ||  | |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||   ||       |  | || ||      ||||||||| || |      || ||   |      ||| |    |  | | | ||  | |||   | 
TTTTAGGAAGCCTATACGCCATGGGGTTTTAGGACTGCCTGGTTATGTTCAGTTTACATCTCCCATCCGTAGATATATGGATCTTCTTGCTCATTATCAGgtgagtttcttctggccatgctgatatgatagggtaatagattacatatcaatgtgtttttgaatgttatctgagaacttcactatccacaattcaatta-