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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGGAGTACCAGCTTGCATAGAGACTCTGCAAAGAGCTGGTATTAAAATTTGGGTTCTTACAGGGGACAAGATTGAAACAGCGATAAACATAGCCTATGgtgagactgttttgaattagacccattttttttcttctttttatgcttatgttaatctgcccaaaagtgtagcagcagttatctcattttatatcttttttccaccttgctgcag

Basic information

species Glycine max
transcript GLYMA18G16990.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G16990.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os10g27220.1 (Oryza sativa), 5'ss of exon 4
GAGGGAGTACCAGCTTGCATAGAGACTCTGCAAAGAGCTGGTATTAAAATTTGGGTTCTTACAGGGGACAAGATTGAAACAGCGATAAACATAGCCTATGgtgagact---gttttgaattaga---cccattttttttcttctttttatgcttatgttaatctgcccaaaagt----gtagcagcagttatctcattttata-----tct---tttttccaccttgctgcag
|| || || || || |||||  | |||||      |||||| || |||||||||||| | ||||| || ||||| |||||||| || || ||||| |||||||| | |    || | ||||| |   | ||| |  |||||||  ||| |  |  ||  | |||   || |  |    ||  || |   ||||| | | ||||     | |   ||  | | |    ||||||
GAAGGGGTTCCTGCCTGCATTCAAACTCTTTCTGCAGCTGGCATAAAAATTTGGGTTTTAACAGGAGATAAGATGGAAACAGCAATTAATATAGCATATGgtgatatttttattcttaattatattgctcatgtcgtttcttcgattttttttcttgagattcttttcatattttcctgtctcatcttatatctaaatatatagaggatttgagttgattctctgctctgcag

upper sequence: GLYMA18G16990.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv00s0189g00030.t01 (Vitis vinifera), 5'ss of exon 19
GAGGGAGTACCAGCTTGCATAGAGACTCTGCAAAGAGCTGGTATTAAAATTTGGGTTCTTACAGGGGACAAGATTGAAACAGCGATAAACATAGCCTATGgtgagactgttttgaattagacccattttttttcttctttttatgcttatgttaatctgcccaaaagtgtagcagcagttatctcattttatatcttttttccacc--ttgctgcag
|| ||||| ||| |||| ||||| |||||    ||||| || || ||||||||||| || |||||||||||||| |||||||| ||||| |||||||||||| ||   |||||  || ||| |   |  |  |  | || || |   ||     || ||   |    |  |   | |  |    | | ||| ||||||| | |     |||||||||
GAAGGAGTTCCATCTTGTATAGAAACTCTTTCTAGAGCAGGAATCAAAATTTGGGTGCTAACAGGGGACAAGATGGAAACAGCAATAAATATAGCCTATGgttagttggtttttgataagatctggtactcatggttttcttgtttctaaaaacatatgtt-atttcttcatttgtacctgatgcttcttaaatcttttgttctttatttgctgcag