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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACCCGCTTGCGTGAGTACCAGGGTGTTGATCCTCACTTTGACAACATTGCAAGGCAGTACCATGACATTGTGCAGgtgacaccagttttgcaaaaatatatttacctctttcgtaccaaatatttttatataaagatatcaacatccgttctcaaatatttctattctgtttgcc...

Basic information

species Glycine max
transcript GLYMA18G11000.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G11000.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os02g02690.1 (Oryza sativa), 5'ss of exon 12
GTTACCCGCTTGCGTGAGTACCAGGGTGTTGATCCTCACTTTGACAACATTGCAAGGCAGTACCATGACATTGTGCAGgtgacaccagttttgcaaaaatatatttacctctttcgtaccaaatatttttatataaagat-atcaacatccgttctcaaatatttctattctgtttgcc
||| | || ||||| |||||||| ||||| ||||| ||||||||    ||||||||||| |||||||| |||||  |||| |       ||||     |   || | | || ||   |   | ||   |  |  |   || ||  ||| ||  | | || |                  
GTTTCACGGTTGCGCGAGTACCAAGGTGTAGATCCACACTTTGATGTAATTGCAAGGCAATACCATGAGATTGTAAAGgtaa-------tttg-----actcatcttcatcattatcaatgagtaccatgtttgatgcatcattgacaaccaatttaaactgcag--------------

upper sequence: GLYMA18G11000.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv19s0090g00440.t01 (Vitis vinifera), 5'ss of exon 12
GTTACCCGCTTGCGTGAGTACCAGGGTGTTGATCCTCACTTTGACAACATTGCAAGGCAGTACCATGACATTGTGCAGgtgacaccagttttgcaaaaatatatttacctctttcgtaccaaatatttttatataaagatatcaacatccgttctcaaatatttctattctgtttgcc
|| || ||| |  | |||||||| |||||||||||||||||||| |  |||||||||||||| || || |||||  |||| ||  ||  |||||     |    |||  |||| | |    | | ||    |   |  || |  |  |    || ||                     
GTGACACGCCTTAGAGAGTACCAAGGTGTTGATCCTCACTTTGATACAATTGCAAGGCAGTATCACGAAATTGTAAAGgtaac--caaatttgc-----ttaccttaattcttccctggtgactgttgcagttcta--atcttga-gtttcctcgcag--------------------