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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGACATGCCTATCGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCGGATCGACTTGATTATGTGGACCAAGTACTggtatgttactttcaaacatcacagcctctttatgagatgtggtatggacaagaattgcattttagcttagctgcatcgtttctggaatttgtgca

Basic information

species Glycine max
transcript GLYMA17G37870.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37870.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 5'ss of exon 11
ACGACATGCCTATCGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCGGATCGACTTGATTATGTGGACCAAGTACTggtatgttactttc-----aaacatcacagcctctttatgagatgtggtatggacaagaattgcattttagcttagctgcatcgtttctggaatttgtgca-
  ||||||||  | || || ||| || ||||  |||| || ||| | ||||||||||||||||| ||||||||||| ||||||||||| || |||||  ||||| |     ||          |  | |  ||| | |    ||    ||||  || | | |    | ||  |||  |  |   | ||   ||| |    | 
-TGACATGCCAGTTGTTGGTGCAGTAACTTTATATGTATCACTTTTGACATTTACTCTCCGTGTGCATCCGGATCGGCTTGATTATGTTGATCAAGTGTTGgtaagccttcttgtgtaggggaaaaaaaatctcctaactctatagtatatgtgcatgtaattt-ctgtactttatatatactttctccacaatctacaaat

upper sequence: GLYMA17G37870.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM5G844195_T02 (Zea mays), 5'ss of exon 12
ACGACATGCCTATCGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCGGATCGACTTGATTATGTGGACCAAGTACTggtatgttactttcaaaca-tcaca--------gcctctt----tatgagatgtggtatggacaagaattgcatttta-gcttagctgca-tcgtt--tctggaatttgtgca-------------------------------------------------------------
  ||||||||  | || ||||| ||| || |  |||| || ||||| || |||||||||||||| ||||| ||||| ||||||||||| |||||||| |||||| ||    || |||||   | |        ||| |||    ||||   |||    ||    || |   ||||||  | |  |||  | | | |     || | |  ||||                                                             
-TGACATGCCAGTTGTTGGAGCCATAACTCTATATGTATCACTTCTGACCTTTACTCTCCGTGTACATCCTGATCGGCTTGATTATGTTGACCAAGTGCTGgtaagtcttctttaaacaactatatgatgtatgccccttctcttatggtctgtttgctgactcagcaagccattttttgttgtgctataattgatagcaaggcaatgatgcaatccattagtggtagtacaatgtcaattgaatcttctaactcattatatttgcttggacag

upper sequence: GLYMA17G37870.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM5G825524_T02 (Zea mays), 5'ss of exon 11
ACGACATGCCTATCGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCGGATCGACTTGATTATGTGGACCAAGTACTggtatgttactttcaaaca-tcacagcctctttatgagatgtggtatggacaagaattgcattttagcttagctgcatcgtttctg----gaatttgtgca-------------------------------------------------------------------
  ||||||||  | || |||||  || || |  |||| || ||||| || |||||||||||||| ||||| || || ||||||||||| |||||||| || ||| ||    || ||||| | | |   | | |      |||    ||    |  |   ||||||   || | || |   |   ||    ||| ||  | |                                                                   
-TGACATGCCAGTTGTTGGAGCCGTAACTCTATATGTATCGCTTCTGACTTTTACTCTCCGTGTACATCCTGACCGGCTTGATTATGTTGACCAAGTGCTCgtaagtcttctttaaacaattatatggtttatgccgtctgtttgctgactcaagaagtcattttttttt-gttgtactataattgataggaacttaggaaggcagtgatgtaatccactaatggtctaatgttaattcaatctaactcgttatatttgtctggacag

upper sequence: GLYMA17G37870.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G75850.1 (Arabidopsis thaliana), 5'ss of exon 11
ACGACATGCCTATCGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCGGATCGACTTGATTATGTGGACCAAGTACTggtatg-ttactttcaaacatcacagcctcttta------tgagatgtggtatggacaagaattgcattttagctta-gctgcatcgtt---tctggaatttg--tgca-------------------------------------------------------------------------------------------
  || |||||||| || ||||| ||  || ||  ||| |||||| | || ||||||||||| |||||||| ||||| ||||| |||||||| |||||| ||||||| || | ||       || |   | | ||      |     ||  | |         ||| || |  |  ||  ||  ||  |    |   || |||   || |                                                                                           
-TGAGATGCCTATTGTCGGAGCTATGACTCTGTTTGTCTCTCTTTTGACTTTTACTCTCCGAGTTCATCCTGATCGGCTTGACTATGTGGATCAAGTATTGgtatggtttcctttcgttgccatatgttttctaaacttttagtcagtattgtctctgtagcttgtatctctgtctacactatatgttcagattcagattttcattgtaaaggtgtaaaatgcatttttaaagttttatgattacttgaatctggtgtagccctggcgttaaactaattattgatccgaaaactttgtag

upper sequence: GLYMA17G37870.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv18s0001g14680.t01 (Vitis vinifera), 5'ss of exon 11
ACGACATGCCTATCGTGGGAGCAATAGCTTTGCATGTTTCTCTTCTTACATTTACTCTCCGTGTTCATCCGGATCGACTTGATTATGTGGACCAAGTACTggtatgttactttcaaacat-cacagcctctttatgagatgtggtatggacaagaatt-gcattttagcttagctgcatcgtttctggaatttgtgca-------
  ||||||||| |  | ||||||||| ||||  |||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||  |   |||  || || ||    |   |  |||    | || ||| |  || ||     |     | | ||   | | |  |||||            
-TGACATGCCTGTTTTTGGAGCAATAACTTTATATGTCTCTCTTCTTACATTTACTCTTCGTGTTCATCCTGATCGGCTTGATTATGTGGATCAAGTACTGgtatgtccc---caattatacaaagttcatgcttatgat-ccatttgcacatggttttgctaacgaatgctgatacacgatctataaaattttctggctgctgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309075|gb|FG999372.1|FG999372
EST:     TTTACTCTCCGTGTTCATCCGGATCGACTTGATTATGTGGACCAAGTACT                         GGGTTCATGTGTCAAGAAGCTTTCTGGAAAACCAAAGCTTGATGACAATAG
genomic: TTTACTCTCCGTGTTCATCCGGATCGACTTGATTATGTGGACCAAGTACTggtatgttac ... aatttgtgcaGGGTTCATGTGTCAAGAAGCTTTCTGGAAAACCAAAGCTTGATGACAATAG
EST: gi|193391202|gb|FK357291.1|FK357291
EST:     TTTACTCTCCGTGTTCATCCGGATCGACTTGATTATGTGGACCAAGTACT                         GGGTTCATGTGTCAAGAAGCTTTCTGGAAAACCAAAGCTTGATGACAATAG
genomic: TTTACTCTCCGTGTTCATCCGGATCGACTTGATTATGTGGACCAAGTACTggtatgttac ... aatttgtgcaGGGTTCATGTGTCAAGAAGCTTTCTGGAAAACCAAAGCTTGATGACAATAG