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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTTGCAAGGCAATAAACTCTCTGGACATATTCCACCGGTGATCGGTCTCATGCAAGCACTTGCTGTCCTgtaagcattgtttgttagtcattatcgaaatattttttgtgaaatttggtcgttgacttgatgttttctccctgatgttcttttaatattgattttatttcaaatttccaatccag

Basic information

species Glycine max
transcript GLYMA17G34380.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34380.2 (Glycine max), 5'ss of exon 10
lower sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 11
GTCCTTGCAAGGCAATAAACTCTCTGGACATATTCCACCGGTGATCGGTCTCATGCAAGCACTTGCTGTCCTgtaagcattgtttgttagtcattatcgaaatattttttgtgaaatttggtcgttgacttgatgttttctccctgatgttcttttaatattgattttatttcaaatttccaatccag
 || |||||||||||| ||||||||||  | |||||| | ||||| |||||||||||||| ||||| ||| |||||| | | ||  |   | || |  |||    |  || | | ||||  || |  |||| | ||| | |      | ||||||||                               
ATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCTCATGCAAGCCCTTGCAGTCTTgtaagtacttttcttc--taatcaatgaagc--tacttataacattt--tcatgaactt-aggttatat-----gttttcttttacag----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193425113|gb|FK389436.1|FK389436
EST:     TCTGGACATATTCCACCGGTGATCGGTCTCATGCAAGCACTTGCTGTCCT                         AGACTTGAGCTGCAACTTGTTAAGTGGATCGATCCCTCCTATCTTGGGAAA
genomic: TCTGGACATATTCCACCGGTGATCGGTCTCATGCAAGCACTTGCTGTCCTgtaagcattg ... tccaatccagAGACTTGAGCTGCAACTTGTTAAGTGGATCGATCCCTCCTATCTTGGGAAA
EST: gi|208335016|gb|GE132905.1|GE132905
EST:     TCTGGACATATTCCACCGGTGATCGGTCTCATGCAAGCACTTGCTGTCCT                         AGACTTGAGCTGCAACTTGTTAAGTGGATCGATCCCTCCTATCTTGGGAAA
genomic: TCTGGACATATTCCACCGGTGATCGGTCTCATGCAAGCACTTGCTGTCCTgtaagcattg ... tccaatccagAGACTTGAGCTGCAACTTGTTAAGTGGATCGATCCCTCCTATCTTGGGAAA