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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTTCTTCCACCATGAATGTACGAATAGTATATATGGACATTATGAGGCCATTTGCTGAATCAGTTTTGAGTGGgtgagtcttctgaaaattttctgattggtatttattacttgcttgtttcctttttggctgaacagaggtacacttgccag

Basic information

species Glycine max
transcript GLYMA17G24420.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G24420.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G140917_T01 (Zea mays), 5'ss of exon 14
GGCTTTCTTCCACCATGAATGTACGAATAGTATATATGGACATTATGAGGCCATTTGCTGAATCAGTTTTGAGTGGgtgagtcttctgaaaattttctgattggtatttattacttgcttgtttcctttttggctgaacagaggtacacttgccag-------------------------------------------
| |||||  |  |  | |||||  | ||||| ||| ||||||| |||||||||||||||||||||  ||||   |||||||    |   |   | | |  |||  |||          | ||| |    |      |  | |   | | |  |                                              
GTCTTTCAGCTTCACTAAATGTTAGGATAGTTTATCTGGACATCATGAGGCCATTTGCTGAATCAACTTTGTTAGGgtgagaa--cgagatgctatttacttgacattgtcatgccaatggttgcaccatctttatagtaaaaacataatctctctcttttctctcattgctgattttttatgtcttcactttggtcag