Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTTGAAGTATGTACATTCTGCTGTACTTGATAAACTTGGTGGGAAAGAACTAGAGTTGTTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGgtatgattccaagtcactccaatacgtccagtccattagcatcacttcatgatcatagctaccatgatagaggtgtatattaaatgttaagaggttctag...

Basic information

species Glycine max
transcript GLYMA17G12850.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12850.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv11s0016g04620.t01 (Vitis vinifera), 5'ss of exon 12
GCCTTGAAGTATGTACATTCTGCTGTACTTGATAAACTTGGTGGGAAAGAACTAGAGTTGTTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGgtatg--attccaagtcactccaatacgtcca-gtccattagcatcacttcatgatcatagctac-catgatagaggtgtatattaaatgttaagaggttctag
||||||||  ||||| ||  |||||      | |||||||| || |||||  | |||||  | |||||||||||||||||||||||||||||| |||||||||||   ||    ||  |   |||   |||| |||   |   |  |    ||| |      |   | || || |   |   |||| |  ||  ||  |     
GCCTTGAAACATGTATATAGTGCTGCTGCAAACAAACTTGGAGGAAAAGAGTTGGAGTTACTCATTGCCATTCTTCCAGACAACAATGGCTCTTTGTATGgtatgtagttttctgttgccataatttttccatgtctgatttaacaaagctatgctggatattgtgcttggtaaaatcgagcattacaaattttgaattg----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193396582|gb|FK364492.1|FK364492
EST:     ACTAGAGTTGTTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATG                         GCGATCTCAAAAGAATCTGTGAAACCGATCTGGGGTTGATTTCTCAGTGCT
genomic: ACTAGAGTTGTTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGgtatgattcc ... cctctttcagGCGATCTCAAAAGAATCTGTGAAACCGATCTGGGGTTGATTTCTCAGTGCT