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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGTTGCTAACAATCACATTGGTGCAATATCATTTCTAATAGCCGATTTTTTCCTCTTCTTTGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAGgtatgtcttagaagatcttatttgtttttttcttttatgcacaagaaattctctcctctgatctgaagcacgtgtttttttttcttctactttgtctttcataacgcag

Basic information

species Glycine max
transcript GLYMA17G11600.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G11600.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 12
GTATGTTGCTAACAATCACATTGGTGCAATATCATTTCTAATAGCCGATTTTTTCCTCTTCTTTGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAGgtatgtct-tagaagatcttatttgtttttttcttttatgcacaagaaattctctcctctgatctgaagcacgtgtttttttttcttctactttgtctttcataacgcag
 |||| || ||   |||| |||||||| ||||| ||||| || |  ||||||||||||||||||||||||  | | ||||||||||| || |||  |||||||||| | |||||  |   |  ||   |   || | |     || ||||    || ||  ||  | || |  |    |  ||| |  || || | ||   |||      
TTATGCTGGTAGACATCATATTGGTGCTATATCGTTTCTGATTGTGGATTTTTTCCTCTTCTTTGGTGTGGCTGCCTTGACAGTTGTACAAGCTTCTCAGgtatgtgtctagaatcttccaactgcagtaccctataa-----aaaaaataaaatcttccaatg-gtagtattttcaatcatttttcata-ttggactaagatattt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23731604|gb|BU763933.1|BU763933
EST:     TTTTCCTCTTCTTTGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAG                         ATATCACGCAATATTACAACAAATGAAATGGCAAATGCAATGCGGTATAGT
genomic: TTTTCCTCTTCTTTGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAGgtatgtctta ... cataacgcagATATCACGCAATATTACAACAAATGAAATGGCAAATGCAATGCGGTATAGT
EST: gi|254317846|gb|GR826830.1|GR826830
EST:     TTTT-CTCTTCTTTGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAG                         ATATCACGCAATATTACAACAAATGAAATGGCAAATGCAATGCGGTATAGT
genomic: TTTTCCTCTTCTTTGGTGTGTTTACTTTGACAGTTGTGCAGGCTAGTCAGgtatgtctta ... cataacgcagATATCACGCAATATTACAACAAATGAAATGGCAAATGCAATGCGGTATAGT