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TGGCTGAATTTCCATCAGCCAAACCTCCAATTGGTGTCTTTTTTGCAGCAGTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAGgttaatttctttttattgcttttgcattactgtttgtgcatgtggtattgtgtgggcatgtagtgactcggaagagactagtaaaaacgaagaccaagtt...
species | Glycine max |
transcript | GLYMA17G07050.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAG AATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAATEST: gi|15203101|gb|BI425869.1|BI425869
genomic: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAGgttaatttct ... ttgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAAT
EST: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAG AATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAATEST: gi|254332042|gb|GR846245.1|GR846245
genomic: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAGgttaatttct ... ttgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAAT
EST: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAG AATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAATEST: gi|12688545|gb|BG154881.1|BG154881
genomic: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAGgttaatttct ... ttgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAAT
EST: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAG AATGGTGCCAAACEST: gi|254341892|gb|GR853029.1|GR853029
genomic: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAGgttaatttct ... ttgttaacagAATGGTGCCAAAC
EST: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAG AATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAATEST: gi|4286168|gb|AI441008.1|AI441008
genomic: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAGgttaatttct ... ttgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAAT
EST: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAG AATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAATEST: gi|4301393|gb|AI443184.1|AI443184
genomic: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAGgttaatttct ... ttgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAAT
EST: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAG AATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAATEST: gi|10710524|gb|BF010242.1|BF010242
genomic: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAGgttaatttct ... ttgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAAT
EST: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAG AATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAATEST: gi|105633448|gb|DW246811.1|DW246811
genomic: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAGgttaatttct ... ttgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAAT
EST: GTTGCCCCTCGCCTGCAGCCTAGATTTTATTCGATCCCCTCATCTCCAAG AATGGTGCCAAACAGAATTCATGTGACCTGTEST: gi|26058284|gb|CA801198.1|CA801198
genomic: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAGgttaatttct ... ttgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGT
EST: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAG AATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAAT
genomic: GTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAGgttaatttct ... ttgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCTGAATTTCCATCAGCCAAACCTCCAATTGGTGTCTTTTTTGCAGCAGTTGCTCCTCGCCTGCAGCCTAGATTTTATTCGATCTCCTCATCTCCAAGgttaatttctttttattgcttttgcattactgtttgtgcatgtggtattgtgtgggcatgtagtgactcggaagagactagtaaaaacgaagaccaagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtggg