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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCACTACTTGAAGAGATTGAAAGCAGGTCTTCAAGGAGAGAATATGGTCAGATTCTGGCAGAATGCCACAGACTATACTGTGAGCAACGCCTCTCTTTGgtgagaacttacatgcttggtcattgtatattgtttgtatatttttttcaatattagtaagtcaactgattgcaagattctttgtttcattccatgaag

Basic information

species Glycine max
transcript GLYMA17G04990.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G73430.1 (Arabidopsis thaliana), 5'ss of exon 12
GCCACTACTTGAAGAGATTGAAAGCAGGTCTTCAAGGAGAGAATATGGTCAGATTCTGGCAGAATGCCACAGACTATACTGTGAGCAACGCCTCTCTTTGgtgagaacttacatgcttggtcattgtatattgtttgtatatttttttcaatattagta-agtcaactgattgcaagattctttgtttcattccatgaag
 ||  || | || |||||||| || |||||  |||| |  |||||||  || || || |||||||||||||||||||||||||| ||||| |||||  | |||||    | |||  |  |  ||   || | ||||   |  | | | |||  ||| || | ||  ||| ||     |||  |  |||||    || |  
ACCTGTATTGGAGGAGATTGAGAGTAGGTCAGCAAGAAAGGAATATGTCCAAATCCTTGCAGAATGCCACAGACTATACTGTGAACAACGGCTCTCGCTTgtgag----ttcattttctggaatacaatttggtttagtttctatctgcaa-gttactagaatcgcctgttt-----attactcatttcacattatcag-

upper sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 13
GCCACTACTTGAAGAGATTGAAAGCAGGTCTTCAAGGAGAGAATATGGTCAGATTCTGGCAGAATGCCACAGACTATACTGTGAGCAACGCCTCTCTTTGgtgagaacttacatgcttggtcattgtatattgtttgtatatttttttcaatattagtaagtcaactgattgcaagattctttgtttcattccatgaag
|||  |  | ||||| || |||||||| || ||||||| |||||||| |||||||||  |||||||||||||||| || ||||| || ||  | || ||||| |           | |||| |||    ||  ||| |||  ||  ||| |  || || | |  ||       ||      ||||||||| | ||  ||
GCCGTTGTTGGAAGACATCGAAAGCAGATCATCAAGGAAAGAATATGTTCAGATTCTTTCAGAATGCCACAGACTGTATTGTGAACAGCGGTTTTCCTTGgtaa-----------cctggtgatt---cataattt-tattcttcattcta-gttggtcatttcaccctaaataaatgctcttgtttcatgctatccag