Sequence
atgc intronic sequence ATGC exonic sequenceAATATTGTATGTTGGCGACCATATTTACACTGATGTCAGTCAATCAAAAGTCCATCTGCGATGGCGAACAGCATTGATTTGTCGAGAACTGGAAGAAGAGgttagtacaatcagtttatgtttgactcatgtttctgagtaaagaaaaattccagaacttaatttttctccttgtgctttgtaaatgttcaaactgcag
Basic information
species | Glycine max |
transcript | GLYMA17G04580.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G04580.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G044819_T02 (Zea mays), 5'ss of exon 11
AATATTGTATGTTGGCGACCATATTTACACTGATGTCAGTCAATCAAAAGTCCATCTGCGATGGCGAACAGCATTGATTTGTCGAGAACTGGAAGAAGAGgttagtacaatca--gtttatgtttgactcatgtttctg----agtaaagaaaaattccagaacttaatttttctccttgtgctttgtaaatgttcaaactgcag
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GATATTATATGTTGGGGACCATATTTACACAGATGTAAGCCAGTCAAAAGTTCATTTACGATGGAGGACGGCATTAATCTGCAGAGAACTAGAAGATGAGgttagtttgcttagagcttaccttttcttgctaattaacaaataataaggataatttgcaaagcattagcattaaagttgcatttt---aatttctgactagc--
upper sequence: GLYMA17G04580.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G48960.1 (Arabidopsis thaliana), 5'ss of exon 12
AATATTGTATGTTGGCGACCATATTTACACTGATGTCAGTCAATCAAAAGTCCATCTGCGATGGCGAACAGCATTGATTTGTCGAGAACTGGAAGAAGAGgttagtacaatcagtttatgtttgactcatgtttctgagtaaagaaaaattccagaacttaatttttctccttgtgctttgtaaatgttcaaactgcag-------------
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GATTTTGTATGTTGGTGACCACATCTACACTGATGTCAGCGTATCCAAAGTCCATCTCAGGTGGCGAACTGCGCTGATTTGCCGTGAACTGGAAGAAGAGgtttggataa--attatac-tctgaactatatcaatagatgac--agaacttgaagggttttcgttcgttgaagtaacataaaaaccctgattttctcttgtttctttgcag
upper sequence: GLYMA17G04580.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv05s0020g00880.t01 (Vitis vinifera), 5'ss of exon 12
AATATTGTATGTTGGCGACCATATTTACACTGATGTCAGTCAATCAAAAGTCCATCTGCGATGGCGAACAGCATTGATTTGTCGAGAACTGGAAGAAGAGgttagtacaatcagtttatgtttgactc-atgtttctgagtaaagaaaaattccagaacttaatttttctccttgtgctttgtaaatgttcaaactgcag-
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GATTTTGTATGTCGGTGACCACATTCATACAGATGTAAGCCAATCAAAAGTACATCTGCGTTGGCGGACGGCTTTGATTTGTCGAGAACTTGAAGAAGAGgttagattttatattttactttttattctatctctttgatcaaagcaagggtt-acaatatattttttggaaatccagagtttgactactgaagaattactMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298169844|gb|HO018468.1|HO018468EST: GGCGAACAGCATTGATTTGTCGAGAACTGGAAGAAGAG TACAGTGCCTTGATTGGTAGCCGTGGTTATAGAGAATCATTGGTGGAGCTT
genomic: GGCGAACAGCATTGATTTGTCGAGAACTGGAAGAAGAGgttagtacaa ... caaactgcagTACAGTGCCTTGATTGGTAGCCGTGGTTATAGAGAATCATTGGTGGAGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATATTGTATGTTGGCGACCATATTTACACTGATGTCAGTCAATCAAAAGTCCATCTGCGATGGCGAACAGCATTGATTTGTCGAGAACTGGAAGAAGAGgttagtacaatcagtttatgtttgactcatgtttctgagtaaagaaaaattccagaacttaatttttctccttgtgctttgtaaatgttcaaactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG