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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACCAGGCTGGGCCATACTAAACTGCGGGAGAATGCCATCATGATCACTAGTACCATCACTGTTGTACTCTTCAGCACATTGgttagacactaatcttctcttgataagcacggtttgtagtgattatgccatgccccagatgttcaattatcataccactggttgcttgaggacgagaaat...

Basic information

species Glycine max
transcript GLYMA17G02560.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 12
TTTACCAGGCTGGGCCATACTAAACTGCGGGAGAATGCCATCATGATCACTAGTACCATCACTGTTGTACTCTTCAGCACATTGgttag---------acactaatcttctcttgataagcacggtttgtagt----gattatgccatgccccagatgttcaattatca-taccactggttgcttgaggacgagaaat-------------------
|| || |||   ||||| ||| |||| |     ||||| ||||||||||||||||| ||||||||||| || ||||||||  |||| ||         | || ||      | ||   |  ||    |   ||        |  |  |     || || ||  | | || | ||||  |||| ||  |    |   ||                   
TTCACAAGGTCAGGCCACACTCAACTCCCTAGTAATGCTATCATGATCACTAGTACAATCACTGTTGTTCTTTTCAGCACGATGgtaagttctctctcaaacaaacacaaccctgtgcaatacatccttcggttcaaagggagacagtatgaaagctgatccctgaacaattccacaagttggttctgataaaatcatctctcttatgttccctcag

upper sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 13
TTTACCAGGCTGGGCCATACTAAACTGCGGGAGAATGCCATCATGATCACTAGTACCATCACTGTTGTACTCTTCAGCACATTGgttagacacta-atcttctcttgataagcacggtttgtagtga--ttatgccatgccccagatgttcaa----ttatcataccactggttgcttgaggacgagaaat
|| || |     || || || ||  | |  | ||| || ||||||||||| ||||||||||||||||| || ||||| ||  ||||  |   | | |  || |    |   |   | ||  || |||  | |   |  |       | | |||    | | |  | | ||      ||  | |        
TTCACAACTTCAGGACACACCAAGGTTCTTGGGAACGCTATCATGATCACCAGTACCATCACTGTTGTTCTTTTCAGTACTGTGgtacgtttcaacactttgttcaaaccggtttgcttcctactgaagtcaaatcgggtttagcctatccaacacgtaacctaatctctaaccttttttgcag-------