Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCGATGGTTGTTGAAGCAAGAAGTGTCAAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATTAAGACAAAGgtagtagtcatcaaaagttgataattgatttcgactaaattatctccagattttaagcatcattgtctttgcag

Basic information

species Glycine max
transcript GLYMA17G00570.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00570.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 12
TCCTCGATGGTTGTTGAAGCAAGAAGTGTCAAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATTAAGACAAAGgtagtagtcatcaaaagttgataattgatttcgactaaattatctccagattttaagcatcattgtctttgcag
 ||| |||||||| |||| ||||||||  | ||| |||||||||| || ||||||||||||||||| ||||| || |||||||||||     || |  |  |   || ||   | |||||    || |     |||||||   |  |||          
CCCTAGATGGTTGCTGAAACAAGAAGTACCTAAGGTTGTCAAATCCATCAATAGGCAGTTGCGTGAAAAATCAATCAAGACAAAGgtga-gctctttgactgcaaatcatgtctatcgacctggttct-----gattttagataaaatttcag------

upper sequence: GLYMA17G00570.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os02g07340.1 (Oryza sativa), 5'ss of exon 9
---------------TCCTCGATGGTTGTTGAAGCAAGAAGTGTCAAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATTAAGACAAAGgtag-----tagtcatcaaaagttgataattgatttcgactaaattatctccagattttaagc----atcattgtctttgcag-----------------
                ||| |||||||| |||| ||||||||  | ||| |||||||||| || ||||||||||||||||| ||||| || |||||||||||       | | |  ||||   ||   || ||  | |     ||| |    | | ||| ||     | |||| ||| |   |                 
CCTTTTGCTTTTCAGCCCTAGATGGTTGCTGAAACAAGAAGTACCTAAGGTTGTCAAATCCATCAATAGGCAGTTGCGTGAAAAATCAATCAAGACAAAGgtgagctctttgactgcaaatcatgtctatcgacctggttctgattttagataaaatttcaggttggagcattctctgtattgaaggagcttgttgttgt

upper sequence: GLYMA17G00570.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 12
TCCTCGATGGTTGTTGAAGCAAGAAGTGTCAAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATTAAGACAAAGgtagtagtcatcaaaagttgat--aattgatttcgactaaattatct-ccagattttaagcatcattgtctttgcag
 ||||| |||||| |||||||||| ||  ||||  ||||||| ||||| || |||||||| ||||| ||||| || |||||||||||   |||| |  |   ||  |  |||| ||        |||| |    | |||| ||  | | |     ||| |||
CCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTTGTCAAGTCTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAGgt--cagtccttcagttttcctgcaattcatggttctggaattgtaagtctgattatattcctaaca--ttttccag

upper sequence: GLYMA17G00570.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G386614_T01 (Zea mays), 5'ss of exon 1
TCCTCGATGGTTGTTGAAGCAAGAAGTGTCAAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATTAAGACAAAGgtagtagtcatcaaaagttgat--aattgatttcgactaaattatct-ccagattttaagcatcattgtctttgcag
 ||||| |||||| |||||||||| ||  ||||  ||||||| ||||| || |||||||| || || ||||| || |||||||||||   |||| |  |   ||  |  |||| ||        || | |    | |||| ||  | | |   | ||| |||
CCCTCGCTGGTTGCTGAAGCAAGAGGTCCCAAAAGTTGTCAACTCTATCAACAGGCAGTTACGCGAAAAATCAATCAAGACAAAGgt--cagtccttcagttttcctgcaattcatggttctggaactgtaagtctgattatattcct-agcattttt-cag

upper sequence: GLYMA17G00570.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G053644_T01 (Zea mays), 5'ss of exon 8
TCCTCGATGGTTGTTGAAGCAAGAAGTGTCAAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATTAAGACAAAGgtagtagtcatcaaaagttgat--aattgatttcgactaaattatct-ccagattttaagcatcattgtctttgcag
 ||||| |||||| |||||||||| ||  ||||  ||||||| ||||| || |||||||| ||||| ||||| || |||||||||||   |||| |  |   ||  |  |||| ||        || | |    | |||| ||  | | |   | ||     
CCCTCGCTGGTTGCTGAAGCAAGAGGT-CCAAAAGTTGTCAAGTCTATCAACAGGCAGTTACGTGAAAAATCAATCAAGACAAAGgt--cagtccttcagttttcctgcaattcatggttctggaactgtaagtctgattatattcctaacatttttcag--

upper sequence: GLYMA17G00570.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G02560.1 (Arabidopsis thaliana), 5'ss of exon 12
TCCTCGATGGTTGTTGAAGCAAGAAGTGTCAAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATTAAGACAAAGgta-gtagtcatcaaaagttgataattgatttcgactaaattatctccagattttaagcatcattgtctttgcag
|||   |||| |  ||||||||||||| ||||||||||| ||||| |||||||||||  |||| || || ||| |||||||||||||| | |    | |||  ||  |  ||| ||| |      ||   | |   |  |||      |  | | || ||
TCCAAAATGGCTACTGAAGCAAGAAGTCTCAAAGATTGTGAAATCCATAAATAGGCAACTGCGCGAAAAGTCTGTTAAGACAAAGgtatgaaagtgttaaacattc-tttttggtttggttcctgtttgatactt-tcataacttctttcatatctgtag

upper sequence: GLYMA17G00570.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 13
TCCTCGATGGTTGTTGAAGCAAGAAGTGTCAAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATTAAGACAAAGgtagtagtcatcaaaagttgataattgatttcgactaaattatctccagattttaagcat-cattgtctttgcag
|||  ||||||| ||||||||||||||| |||| ||||| |||||||||||  | ||| |  | |||||| |||| ||||| ||||||  |||   |  |  ||  |        ||    |  | | |    ||  || | ||| ||||   | |||||
TCCAAGATGGTTATTGAAGCAAGAAGTGCCAAAAATTGTTAAATCTATAAACCGACAGCTAAGAGAGAAAACTATCAAGACGAAGgtacgagtttcctgatattcttttaaaggatctgtgatgtaaccattggaaatttaacattcatttcatctgcag