Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCATTTAAAAATGAATCCAAAAAAATGGTGGTTGCACTAGTTGATATGGAGCGTGCATTTGTTCCACCACAACACTTTATTCGTTTAGTACAGAGGCGgtatgttcaatatatgacacttgttacactttttttatttatgaattaataatcttaatgtccttaatgggtgcattaatttatttttcatgtgggactc...

Basic information

species Glycine max
transcript GLYMA17G00480.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os02g50550.1 (Oryza sativa), 5'ss of exon 12
AGGCATTTAAAAATGAATCCAAAAAAATGGTGGTTGCACTAGTTGATATGGAGCGTGCATTTGTTCCACCACAACACTTTATTCGTTTAGTACAGAGGCGgtatgttcaatatatgacacttgttacactttttttatttatgaattaataatcttaatgt-ccttaatggg--tgcattaatttatttttcatgtgggactc-------
| |  || |||| |||  | ||||| ||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| || ||||||||||| ||  |||||||         | | |||  |  | |   ||||    ||  ||  |    | ||| | |  |||||    | || ||| | ||||          |          
ATGTCTTCAAAAGTGATGCAAAAAAGATGGTAGTTGCACTTGTTGATATGGAGCGTGCCTTTGTCCCACCACAACACTTCATCCGTTTAGTACAAAGAAGgtatgtca-------ggctcttaattgaataactttacagttggtttggt---ttcaatctgctctaatgtaacttcagtaaataatttccaccacaaaagctgataggg

upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 12
AGGCATTTAAAAATGAATCCAAAAAAATGGTGGTTGCACTAGTTGATATGGAGCGTGCATTTGTTCCACCACAACACTTTATTCGTTTAGTACAGAGGCGgtatgttcaatatatgacacttgttacactttttttatttatgaattaataatcttaatgtccttaatgggtgcattaatttatttttca-tgtgg-gactc------
| |  || || |||||| |||| ||||||||||||||||||||||||||||| || || ||||| ||||| ||||| ||||| ||| | || || ||| ||||| ||   |   || |  |  || || ||||| | |||||   | |||  | | |        |||   | |  |   | |   | || |||   |||||      
ATGGTTTCAAGAATGAAGCCAAGAAAATGGTGGTTGCACTAGTTGATATGGAACGCGCTTTTGTACCACCTCAACATTTTATCCGTCTTGTGCAAAGGAGgtattttggct---tgtctttctttgcaatttttgtttttattt-tcaatggt-tcatgactgaaaattatttctctttctgacgatgcactgtattgactccatcag

upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G59610.1 (Arabidopsis thaliana), 5'ss of exon 12
AGGCATTTAAAAATGAATCCAAAAAAATGGTGGTTGCACTAGTTGATATGGAGCGTGCATTTGTTCCACCACAACACTTTATTCGTTTAGTACAGAGGCGgtatgttcaatatatgacacttgttacactttttttatttatgaattaataatcttaatgtccttaatgggtgcattaatttatttttcatgtgggactc----
| | ||| || |||||| | || || ||||| |||||| ||||||||||||||||||||||||| ||||| || ||||| || ||  | ||||| ||  ||||   |||   |    | ||| ||   ||||||   | |       | |    |||   | || ||    |  |     |||| ||  || |    ||     
ATGGATTCAAGAATGAAGCTAAGAAGATGGTAGTTGCATTAGTTGATATGGAGCGTGCATTTGTACCACCTCAGCACTTCATCCGCCTCGTACAAAGAAGgtaacatcagctt----ccctttttttgctttttggctgtcatttcgagtggcgttatcatactcaaaacttatagattattatcttaaatttccatcttttaa

upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 12
AGGCATTTAAAAATGAATCCAAAAAAATGGTGGTTGCACTAGTTGATATGGAGCGTGCATTTGTTCCACCACAACACTTTATTCGTTTAGTACAGAGGCGgtatgttcaatatatgacacttgttacactttttttatt-tatgaattaataatcttaatgtccttaatgggtgcattaatttatttttcatgtgggactc
| |  ||||| |||||  | || |||||||| |||||||| |||||||||||||||||||||||||| || || || || || ||| | || || |||||||||| | ||| |   |    ||  | |   ||| |||| |||   |||  ||| | | ||    |||    |     || || ||   | | | |   | 
AAGGGTTTAAGAATGAGGCAAAGAAAATGGTTGTTGCACTTGTTGATATGGAGCGTGCATTTGTTCCCCCTCAGCATTTCATCCGTCTGGTGCAAAGGCGgtatgctaaatgttaaattgatgagagatgatttatattatatcttttataaatttcattgagagtaaaaaatctgcaaaatt-ttacacctattgtgttt

upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S109_214V6.1 (Physcomitrella patens), 5'ss of exon 12
AGGCATTTAAAAATGAATCCAAAAAAATGGTGGTTGCACTAGTTGATATGGAGCGTGCATTTGTTCCACCACAACACTTTATTCGTTTAGTACAGAGGCGgtat-gttcaatatatgacacttgttacactttttttatttatgaattaataatcttaa-tgtccttaatgggtgcattaatttatttttcatgtgggactc----------------------------------------
| |  | || |   ||| | || |||||||| ||||| || ||||||||||||||||||||| |||| || |||||||||||  |  | || ||| |  ||||  | |     |   |   |   |     ||    ||   || |     || ||    ||  ||   || |   | |  ||||| |||   | ||   |                                         
ATGAGTATAGAGCAGAAGCAAAGAAAATGGTTGTTGCGCTTGTTGATATGGAGCGTGCATTTATTCCCCCTCAACACTTTATCAGACTTGTTCAGCGCAGgtagagcttggcttgatattttgtcttgtagttggggatcagtgcagaggaaacctcctctgatctatttgcggctactggtttatgtttagcgaggtcgttcgggtgtttatttttctgataaagtgttacacttaaacag

upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S426_19V6.1 (Physcomitrella patens), 5'ss of exon 12
AGGCATTTAAAAATGAATCCAAAAAAATGGTGGTTGCACTAGTTGATATGGAGCGTGCATTTGTTCCACCACAACACTTTATTCGTTTAGTACAGAGGCGgta-tgttcaatatatgacacttgtt------acactttttttattta---tgaattaataatcttaatgtccttaatgggtgcatt------aatttatttttcatgtgggactc-----------------------
| |  |  | |  |||| |||| |||||||  ||||| ||||||||||||||||| | |||| ||||||| ||||| |||||  | || || ||  |  |||| |   |||  |    || |  ||        || |       |||   || |  | || |||  || | ||  |  |   |||         | || |  |   |  ||| |                        
AAGAGTACAGAGTTGAAGCCAAGAAAATGGCTGTTGCCCTAGTTGATATGGAGCGCGTATTTATTCCACCGCAACATTTTATCAGATTGGTGCAACGCAGgtaatacacaactttcctcattgtttttccaggtacctggacctcttaaattggaacattactctcgatttactggacagtatcatctgacacggtataatcctttggctggatttttgggaacgccttgtgtacatag

upper sequence: GLYMA17G00480.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S33_163V6.1 (Physcomitrella patens), 5'ss of exon 12
AGGCATTTAAAAATGAATCCAAAAAAATGGTGGTTGCACTAGTTGATATGGAGCGTGCATTTGTTCCACCACAACACTTTATTCGTTTAGTACAGAGGCGgtatgt-tcaatatatgacacttgttacactttttttatttatgaattaataatcttaatgtccttaatgggtgcattaatttatttttcatgtgggactc
| | ||  |    |||||| || |||||||| ||||| || ||||| ||||||||||||||| | ||||| ||||| ||| || |  | || ||  |  ||||| | || |  ||         | |     |    |  ||| | | || | |    || | |   |  |||  |    |  | | ||    |    |  
ACGAATACAGGGTTGAATCAAAGAAAATGGTTGTTGCTCTTGTTGACATGGAGCGTGCATTTATCCCACCTCAACATTTTGTTAGACTTGTCCAACGCAGgtatatctcgacttacttggtgcttcatctactcccaagatattagtaaagattggagatattcagtaacggtctagagctacactgtttggattcagca-