1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGCTCTTGCTCAATATCCATTTCAACGTACTAAACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtcttctttgacatattctaatagatcaacaattcatacctccagttgaataatttattatagtaaaatgtcttaacaactaatttattttgt...
species | Glycine max |
transcript | GLYMA16G31860.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|208124566|gb|GD925104.1|GD925104
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193365547|gb|FK332334.1|FK332334
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTTACGACGATTTGCCEST: gi|208178344|gb|GD978297.1|GD978297
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAA-TTTACGACGATTTGCC
EST: CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTAACGACGAEST: gi|193665986|gb|FK610491.1|FK610491
genomic: CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACA-Ggttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTA-CGACGA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|208302509|gb|GE097068.1|GE097068
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAAG ATGGGTATATCCTTCCAAATEST: gi|193455889|gb|FK417010.1|FK417010
genomic: CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACA-Ggttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAAT
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193635781|gb|FK580360.1|FK580360
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGEST: gi|208307008|gb|GE101548.1|GE101548
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTG
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193363661|gb|FK330881.1|FK330881
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATT-GCCAEST: gi|208081536|gb|GD879922.1|GD879922
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193305525|gb|FK269986.1|FK269986
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|208027392|gb|GD825818.1|GD825818
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193328307|gb|FK294328.1|FK294328
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTNAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGEST: gi|208189809|gb|GD987769.1|GD987769
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTG
EST: CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAAG ATGGGTATATCCTTCCEST: gi|193703030|gb|FK639252.1|FK639252
genomic: CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACA-Ggttcttcgtc ... cattaaatagATGGGTATATCCTTCC
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193402040|gb|FK369401.1|FK369401
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193391981|gb|FK355662.1|FK355662
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAAGAAATTTACGACGATTTGCCEST: gi|207834137|gb|GD808516.1|GD808516
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAA-GAAATTTACGACGATTTGCC
EST: CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAAG ANGG-TGTATCCTTCCEST: gi|207726251|gb|GD704619.1|GD704619
genomic: CTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACA-Ggttcttcgtc ... cattaaatagATGGGTATATCCTTCC
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193675317|gb|FK619107.1|FK619107
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAAAATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193351967|gb|FK318796.1|FK318796
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193431058|gb|FK398218.1|FK398218
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193676751|gb|FK617873.1|FK617873
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGTCCEST: gi|207715576|gb|GD696690.1|GD696690
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTG-CC
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGEST: gi|193372953|gb|FK335063.1|FK335063
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAG
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTAEST: gi|193616707|gb|FK567849.1|FK567849
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGEST: gi|193627977|gb|FK573245.1|FK573245
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACG
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGEST: gi|207765664|gb|GD735909.1|GD735909
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTG
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGCATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193639323|gb|FK586110.1|FK586110
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTNAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193324260|gb|FK292624.1|FK292624
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATT-GCCAEST: gi|193508573|gb|FK465436.1|FK465436
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTACCAAAATAATAGCTGAAAGAAATTTACGACGATTTGEST: gi|193432198|gb|FK395662.1|FK395662
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTT-CCAAA-TA-TAGCTGAAAGAAATTTACGACGATTTG
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTAGCCAEST: gi|208138033|gb|GD938501.1|GD938501
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193383926|gb|FK353123.1|FK353123
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|208249109|gb|GE046734.1|GE046734
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTACCAAAATAATAGCTGAAAGEST: gi|193348700|gb|FK317748.1|FK317748
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTT-CCAAA-TA-TAGCTGAAAG
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193325804|gb|FK290243.1|FK290243
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAGGAAATTTACGACGATTTGTCCEST: gi|193556390|gb|FK515715.1|FK515715
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTG-CC
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|207691336|gb|GD673274.1|GD673274
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAEST: gi|193561210|gb|FK520247.1|FK520247
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193641596|gb|FK592422.1|FK592422
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTNAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCAEST: gi|193358758|gb|FK328436.1|FK328436
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
EST: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAG ATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
genomic: ACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtc ... cattaaatagATGGGTATATCCTTCCAAATATAGCTGAAAGAAATTTACGACGATTTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTCTTGCTCAATATCCATTTCAACGTACTAAACTCCAGCAGATATGTGTTGGATTCTTTGAGTGGCCTTCAGAGAAAACAGgttcttcgtcttctttgacatattctaatagatcaacaattcatacctccagttgaataatttattatagtaaaatgtcttaacaactaatttattttgt
- - - - - - - - - - - - - - - - - - - GCAGAT