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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAAACTCAGTAGTTTATCCTCTGACTTCAATTCCCTTAATCGCCTACTGCGCATTGCCAGCGGTCTGTCTGCTCACTGGGAAGTTCATTGTCCCCGAGgtaggattaatttttctttacttttaattacaatcctcaaactgagtacaagttacatcttaggaatacataaacacaggagcaattcttgcacaagtac...

Basic information

species Glycine max
transcript GLYMA16G28080.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G28080.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv18s0072g00370.t01 (Vitis vinifera), 5'ss of exon 13
CATAAACTCAGTAGTTTATCCTCTGACTTCAATTCCCTTAATCGCCTACTGCGCATTGCCAGCGGTCTGTCTGCTCACTGGGAAGTTCATTGTCCCCGAGgtaggat-taatttttctttacttttaatta-caatcctcaaactgagtacaagttacatcttaggaatacataaacacaggagcaattcttgcacaagtac-
 || |||||||| ||||||||   ||| || |||||||| || ||||||||  | ||||| ||  ||||||| ||||||||||||||||||||||||||||||   | ||  | |  || | | |||| || |||||     | ||   |    | | |||||     | | |   |   | || |   |  |   |  ||  
TATCAACTCAGTTGTTTATCCGTGGACGTCCATTCCCTTGATTGCCTACTGTACCTTGCCGGCTTTCTGTCTCCTCACTGGGAAGTTCATTGTCCCCGAGgtaacctctagctctatttcattcttaaatatcaatctctgtaatgtccattt-tgagatcttct--tttcttttccttggaagaaccacaagattatatagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014857|gb|CX701599.1|CX701599
EST:     CTCACTGGGAAGTTCATTGTCCCCGAG                         ATAAGTAACTATGCCAGTATCATTTTCATGGCCCTCTTCATCTCTATAGCT
genomic: CTCACTGGGAAGTTCATTGTCCCCGAGgtaggattaa ... tccttcacagATAAGTAACTATGCCAGTATCATTTTCATGGCCCTCTTCATCTCTATAGCT