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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTGATGCATTAAGGACAACGATGTTTATACTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAGgtactataatttgatgattattttatggttttataattcaaggtaagcattgcagaggataatacgaaactttgttttgagaag

Basic information

species Glycine max
transcript GLYMA16G26550.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 11
GTATTTGATGCATTAAGGACAACGATGTTTATACTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAGgtactataatttgatgattattttatggttttataattcaaggtaagcattgcagaggataatacgaaactttgttttgagaag
||||||||| ||||||||||||| ||||||||||| |||||||||| |||||| || |||||||| |||||||||||||||||  ||||||||| |     || |  |  | |||    || || |    | | |||  || | |    |   | | ||| |||           
GTATTTGATACATTAAGGACAACAATGTTTATACTAGGAATGATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAGgtatt-----ttaacaaagactttcaatttatagag---aggataaagatggaaactaac--tgcaaaatttttcag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8403010|gb|BE058644.1|BE058644
EST:     GATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAG                         TTTCAGGTCCTGAGACTAAAGATAGTTCTTTGGATTCCATGGTGTCTTCTG
genomic: GATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAGgtactataat ... ttttgagaagTTTCAGGTCCTGAGACTAAAGATAGTTCTTTGGATTCCATGGTGTCTTCTG
EST: gi|58021111|gb|CX707853.1|CX707853
EST:     GATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAG                         TTTCAGGTCCTGAGACTAAAGATAGTTCTTTGGATTCCATGGTGTCTTCTG
genomic: GATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAGgtactataat ... ttttgagaagTTTCAGGTCCTGAGACTAAAGATAGTTCTTTGGATTCCATGGTGTCTTCTG