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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATACCAAAATTTGATTACAAGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagtactagctaggctgatatgccttgtgtcattataattttttttaaattatttccaatgaattagtagtgacaatttttgttaacttattttgcca...

Basic information

species Glycine max
transcript GLYMA16G26360.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g70390.1 (Oryza sativa), 5'ss of exon 12
CCAATACCAAAATTTGATTACAAGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagtactagctaggctgatatgccttgtgtcattataattttttttaaattatttccaatgaattagtagtgacaatttttgttaacttattttgcca-----
   ||| |||||  | || ||    ||||||||||||||||| || || ||||| || || |||||||||||| | ||||||||||| ||||| ||||||||| ||     | |   ||   | | |  | |||  ||||   | |   |    | | |    ||||| |  | |   || | |||     ||| ||        
AACATATCAAAACCTAATAACTCAATCAATGTATGACAAACAGCTAGATAGTGGGAAAGGCACACTTCTCCATCTCTGTGATGATGTGATTCAGCAGGAAgtaggtct---ccatattgtagtacttgat-tcagaataagcatatcagagacttgtgctcacaattattt-tcatctttgtggtttctgaattctgatgtccag

upper sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os11g32490.1 (Oryza sativa), 5'ss of exon 12
CCAATACCAAAATTTGATTACAAGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagtactagctaggctgatatgccttgtgtcattataattttttttaaattatttccaatgaattagtagtgacaatttttgttaacttattttgcca
    ||||| |||||||||||||  || |||||||| ||||| || |||||||| || || |||||||| ||||| ||||||||||| || || || |||||| | |       ||  ||| |  |||   |   ||||| || | ||    |||  ||| |||  || ||       |||                   
GTCTTACCAGAATTTGATTACAAAATCGATGTATGATAAACAGCTTGACAGTGGGAAAGGAACACTTCTGCATTTGTGTGATGATGTGATCCAGCAAGAAgtatggaaccatgggg--gatttctctttgatatatataacttgtctttgtatatg-ccactgacata-taaaatgggtttgcag---------------

upper sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G161168_T01 (Zea mays), 5'ss of exon 12
CCAATACCAAAATTTGATTACAAGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagt--actagctaggctgatatgccttgt-----gtcattataattttttttaaattatttccaatgaattagtagtgacaatttttgttaacttattttgcca
    |||||||| || || ||    |||||||||||||||||||| || ||||| || || ||||| |||||  | ||||||||||| ||||||||||| ||| ||  ||   |||  || |  ||| || |       || || |||   |  | | |   |||| ||  || | | ||    | |||| |||   ||  |     
AACCTACCAAAACTTAATCACTCAATCAATGTATGACAAACAACTAGATAGTGGGAAAGGCACACTCCTCCACCTCTGTGATGATGTGATTCAACAGGAGgtaggtccacactctacactca-gtgctttcttgaggaccaataaaataaatactcactccgttccgatttataatttgtt-tgactttttttattctaagt-----

upper sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G052279_T01 (Zea mays), 5'ss of exon 9
CCAATACCAAAATTTGATTACAAGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagtactagctaggctgatatgccttgtgtcattataattttttttaaatta--tttccaatgaattagtagtgacaatttttgttaacttattttgcca----
    |||||||| || || ||    |||||||||||||||||||| |  ||||| || || ||||| |||||  | ||||||||||| ||||||||||| ||| || |   ||       ||  |   |||   |  | |       |||| ||  |   |  |   ||   | | | ||||| | | |  || || | | |    
AACCTACCAAAACTTAATCACTCAATCAATGTATGACAAACAACTAGTTAGTGGGAAAGGCACACTCCTCCACCTCTGTGATGATGTGATTCAACAGGAGgtaggtccacactc------tacactcagtgctttcttgaggaccaataaaataaatactccctccgttccgatttataatttgtttgacttttttattctaagtt

upper sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G527387_T01 (Zea mays), 5'ss of exon 12
CCAATACCAAAATTTGATTACAAGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagtactagctaggctgatatgccttgtgtcattataattttttttaaattatttccaatgaattagtagtgacaatttttgttaacttattttgcca
|||||||||||| |||||||||| ||| |||||||| || || || || ||||| |  || ||||| ||||| || || |||||||| || || ||||||||| | |  ||||      |||| |||       ||| | |   |||     |    | |||| ||   |    ||  ||||||||              
CCAATACCAAAACTTGATTACAAAGTCGATGTATGATAAGCAGCTTGATAGTGGGAGAGGAACACTCCTCCACTTGTGCGATGATGTGATCCAGCAGGAAgtatgca--agctgtcactatatccctgacagattta-actgcctttgtcggtgccgctaatgtatccttgaacact-tttttgttgcag----------

upper sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G011136_T01 (Zea mays), 5'ss of exon 12
CCAATACCAAAATTTGATTACAAGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagtactagctaggctgatatgccttgtgtcatta-taattttttttaaattatttccaatgaattagtagtgacaatttttgttaacttattttgcca
    || || |||||||||||||  ||||||||||||||||| || || ||||| || || || ||||| || ||||| ||||| || || || || |||||| | | ||| |         | | |     ||  |     |   | |   |||| | || |||  |   |    | ||  | ||               
AATGTATCAGAATTTGATTACAAAATCAATGTATGACAAACAGCTTGATAGTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAAgtatgaaatagttgaaa-accgtacttcaaaccacaagctcgtacctatgccttatgttcactgatatcccatcatccatggt-gtag-------------

upper sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G19340.1 (Arabidopsis thaliana), 5'ss of exon 12
CCAATACCAAAATTTGATTACAAGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagtactagctaggctgatatgccttgtgtcattataattttttttaaattatttccaatg-aattagtagtgacaatttttgttaacttattttgcca
    || || || ||||| ||   |||||||||||| |||||||| ||||| || | ||| || || || ||||| ||||||||||| ||||| || ||||||||| |  ||  |      || | ||||   |  |||         |  ||| ||  | || |||    ||                            
TACGTATCAGAACTTGATAACTCAGTCAATGTATGATAAACAACTAGACAGCGGGAGGGGAACGCTACTACATTTGTGTGATGATGTGATTCAGCAAGAAgtaagttcccgcatga-----atacattgtaatacaatagaaacaaaaagcttacttggattgtaatgcacag----------------------------

upper sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 12
CCAATACCAAAATTTGATTACAAGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAgtaagtactagctaggctgatatgccttgtgtcattataattttttttaaattatttccaatgaattagtagtgacaatttttgttaacttattttgcca----
   ||| || || || || |||   || |||||||| || || ||||| |||||||||||||| ||||| || || |||||||| || |||||||| ||||||||| |||   |    ||      ||   ||  |  ||| ||||     || ||   | | ||| |  | |     |||| || ||   ||   |  |    
TGCATATCAGAACTTAATCACACAATCCATGTATGATAAGCAGCTGGATAGTGGAAAGGGTACTCTTCTTCACTTGTGTGATGACGTGATTCAACAAGAAgtaagttcta---aaatagaggaattttaattctatccaatattttggtctttcttgatagtcaat-atgatttttttttttggtgaaaccatacagaaaattt