1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTAAGCATGTGATCAACCTGTTTGTGCAGTATACACCCTACAAACCATTGGATGGTGATTGGCAAGATCATGACTACAGAgttagtttgttttggttgttctagttgcattttttcttatgttctgttagcatttcagtgcttagagtttttgttctaccatagtcacgcgcttgtgtgtgcaggcacccacttaatgctaaaattacttgttgaatattcattatgttgaaggtgcttcattatatcttatctatcctcctattcag
species | Glycine max |
transcript | GLYMA16G25390.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ATACACCCTACAAACCATTGGATGGTGATTGGCAAGATCATGACTACAGA GAATCGTTTGCACAAAAATGCTTCAAGTTGATTGATGAATATGCCCCTGGCEST: gi|151398508|gb|EV268379.1|EV268379
genomic: ATACACCCTACAAACCATTGGATGGTGATTGGCAAGATCATGACTACAGAgttagtttgt ... tcctattcagGAATCGTTTGCACAAAAATGCTTCAAGTTGATTGATGAATATGCCCCTGGC
EST: ATACACCCTACAAACCATTGGATGGTGATTGGCAAGATCATGACTACAGA GAATCGTTTGCACAAAAATGCTTCAAGTTGATTGATGAATATGCCCCTGGCEST: gi|58017284|gb|CX704026.1|CX704026
genomic: ATACACCCTACAAACCATTGGATGGTGATTGGCAAGATCATGACTACAGAgttagtttgt ... tcctattcagGAATCGTTTGCACAAAAATGCTTCAAGTTGATTGATGAATATGCCCCTGGC
EST: ATACACCCTACAAACCATTGGATGGTGATTGGCAAGATCATGACTACAGA GAATCGTTTGCACAAAAATGCTTCAAGTTGATTGATGAATATGCCCCTGGC
genomic: ATACACCCTACAAACCATTGGATGGTGATTGGCAAGATCATGACTACAGAgttagtttgt ... tcctattcagGAATCGTTTGCACAAAAATGCTTCAAGTTGATTGATGAATATGCCCCTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAGCATGTGATCAACCTGTTTGTGCAGTATACACCCTACAAACCATTGGATGGTGATTGGCAAGATCATGACTACAGAgttagtttgttttggttgttctagttgcattttttcttatgttctgttagcatttcagtgcttagagtttttgttctaccatagtcacgcgcttgtgtgtgcaggcacccacttaatgctaaaattacttgttgaatattcattatgttgaaggtgcttcattatatcttatctatcctcctattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA