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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataacatttccactccaattattgtcattatgaaatgttgccaatttagaacatgcaatttacaaaagttagcttcatattatcccgtcaatta...

Basic information

species Glycine max
transcript GLYMA16G24270.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8286343|gb|BE023902.1|BE023902
EST:     CCTCAATCTCCTTTGGTCCTTGAAG                         GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCA
genomic: CCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCA
EST: gi|192307850|gb|FG999329.1|FG999329
EST:     CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG                         GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: gi|6227846|gb|AW156445.1|AW156445
EST:     CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG                         GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACANAGTAAGGCAAC
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: gi|6718797|gb|AW306444.1|AW306444
EST:     CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG                         GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: gi|208319638|gb|GE110775.1|GE110775
EST:     CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG                         GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: gi|9984582|gb|BE658690.1|BE658690
EST:     CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG                         GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: gi|193700940|gb|FK639951.1|FK639951
EST:     CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG                         GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: gi|208067229|gb|GD862671.1|GD862671
EST:     CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG                         GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: gi|192303245|gb|FG995581.1|FG995581
EST:     CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG                         GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
genomic: CCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
EST: gi|207786016|gb|GD758269.1|GD758269
EST:     CATTGTACTGATTTTCGTAGGATGTCCTCAATCTCCTTTGGTCCTTGAAG                         GTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC
genomic: CATTGTACTGATTTTCG-AGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataa ... ttttgttcagGTAATGAGAAGAACTGCTCCTCACCTGATGCAGTTCACAAAGTAAGGCAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCCTTCCTACACCATCACATGTAGCAATTGTGCCCATTGTACTGATTTTCGAGGATGTCCTCAATCTCCTTTGGTCCTTGAAGgtatgcataacatttccactccaattattgtcattatgaaatgttgccaatttagaacatgcaatttacaaaagttagcttcatattatcccgtcaatta

- - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactcc