1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGATCCTATTCTTCAAGAATATCGTCCTTGTTTATCTCCAGTTGCTTCTTTAGAGTCTGAGAAAAAGGTTACTAAAAGAAGCTTTGACAAATTGGATGAGgtagtatatcttaattgtaatcactaggcattgcttgtgaagtgaagcaaggtttaattttcagagtatttattgcag
species | Glycine max |
transcript | GLYMA16G23840.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ANGAGTCTGAGAAAAAGGTTACTAAAAGAAGCTTTGACAAATTGGATGAG CTGTCACCTGAAAGAGAGAGGCTTGTGGATGATTGTGCTCAAACAGACCCTEST: gi|298184319|gb|HO029532.1|HO029532
genomic: A-GAGTCTGAGAAAAAGGTTACTAAAAGAAGCTTTGACAAATTGGATGAGgtagtatatc ... tttattgcagCTGTCACCTGAAAGAGAGAGGCTTGTGGATGATTGTGCTCAAACAGACCCT
EST: TAGAGTCTGAGAAAAAGGTTACTAAAAGAAGCTTTGACAAATTGGATGAG CTGTCACCTGAAAGAGAGAGGCTTGTGGATGATTGTGCTCAAACAGACCCTEST: gi|58019926|gb|CX706668.1|CX706668
genomic: TAGAGTCTGAGAAAAAGGTTACTAAAAGAAGCTTTGACAAATTGGATGAGgtagtatatc ... tttattgcagCTGTCACCTGAAAGAGAGAGGCTTGTGGATGATTGTGCTCAAACAGACCCT
EST: TAGAGTCTGAGAAAAAGGTTACTAAAAGAAGCTTTGACAAATTGGATGAG CTGTCACCTGAAAGAGAGAGGCTTGTGGATGATTGTGCTCAAACAGACCCT
genomic: TAGAGTCTGAGAAAAAGGTTACTAAAAGAAGCTTTGACAAATTGGATGAGgtagtatatc ... tttattgcagCTGTCACCTGAAAGAGAGAGGCTTGTGGATGATTGTGCTCAAACAGACCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCCTATTCTTCAAGAATATCGTCCTTGTTTATCTCCAGTTGCTTCTTTAGAGTCTGAGAAAAAGGTTACTAAAAGAAGCTTTGACAAATTGGATGAGgtagtatatcttaattgtaatcactaggcattgcttgtgaagtgaagcaaggtttaattttcagagtatttattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC