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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGCTTTTACATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaacttgatttatttatattgtttttataagaaatgacctatggttccactggaggggattctaaactagttgtcttttttgtcgcag

Basic information

species Glycine max
transcript GLYMA16G17580.2
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208205518|gb|GE004963.1|GE004963
EST:     CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTG                         CTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
genomic: CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaact ... tttgtcgcagCTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
EST: gi|193688679|gb|FK628748.1|FK628748
EST:     CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTG                         CTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
genomic: CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaact ... tttgtcgcagCTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
EST: gi|193406247|gb|FK370586.1|FK370586
EST:     CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTG                         CTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
genomic: CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaact ... tttgtcgcagCTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
EST: gi|193667314|gb|FK613500.1|FK613500
EST:     CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTG                         CTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGAT
genomic: CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaact ... tttgtcgcagCTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGAT
EST: gi|193521415|gb|FK478972.1|FK478972
EST:     CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTG                         CTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
genomic: CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaact ... tttgtcgcagCTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
EST: gi|193479622|gb|FK448145.1|FK448145
EST:     CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTG                         CTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
genomic: CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaact ... tttgtcgcagCTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
EST: gi|207683796|gb|GD665099.1|GD665099
EST:     CATCCTTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTG                         CTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
genomic: CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaact ... tttgtcgcagCTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
EST: gi|207716323|gb|GD698931.1|GD698931
EST:     CATCCTTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTG                         CTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
genomic: CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaact ... tttgtcgcagCTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
EST: gi|208141387|gb|GD936135.1|GD936135
EST:     CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTG                         CTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
genomic: CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaact ... tttgtcgcagCTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
EST: gi|193474066|gb|FK440147.1|FK440147
EST:     CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTG                         CTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
genomic: CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaact ... tttgtcgcagCTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
EST: gi|193429244|gb|FK394934.1|FK394934
EST:     CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTG                         CTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATA
genomic: CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaact ... tttgtcgcagCTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATA
EST: gi|193710657|gb|FK646869.1|FK646869
EST:     CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTG                         CTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG
genomic: CATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaact ... tttgtcgcagCTGGGACCAGGGGATCACTGGATCGGCAGGGCCTCAAGAGATACTCTGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTTGCTTTTACATCCCTCCATCCCTTCGCACCAGAGCTGTAACCAGAACTCCACCATCTGgtttgtaacttgatttatttatattgtttttataagaaatgacctatggttccactggaggggattctaaactagttgtcttttttgtcgcag

- - - - - - - - - - - - - - - -  AGAGCT