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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATCTAAAGGAATGTTCATAGACTCTTGCTATGCTCACTGCCAAACAGAATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatattgcattattttcttccttttccataatataagcctttttgtgtggtgtttttgttattacttcctttagtattgagttgaaaagataacttgtatgcattacatttacattctgcag

Basic information

species Glycine max
transcript GLYMA16G17150.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G17150.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv02s0087g00400.t01 (Vitis vinifera), 5'ss of exon 12
TTCATCTAAAGGAATGTTCATAGACTCTTGCTATGCTCACTGCCAAACAGAATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatattgcattatttt-cttccttttccataatataagcctttttgtgtggtgtttttgttattacttcctttagtattgagttgaaaagataacttgtatgcattacatttacattctgcag
  | || ||||||||||||||| |||| |||||||| ||||||||||| |||   ||||| ||||||   | |   ||||| |||   ||||  || || |||||   |      |     | | ||| |||||  |     || |||    |   | |       ||| ||   || |     || | | |   ||||   ||                       
CCCCTCCAAAGGAATGTTCATAAACTCCTGCTATGCCCACTGCCAAACCGAAATGCAGGAAACATGGCTGAGGGACGACTCCCCAGTACTTGGAAAAACAgtaagccttctaccaacaccaccttcttctccattttcccgaccgtttcacttaaggctgcaac--ttagttgggttggac---aggttagagactaacccatac----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6668127|gb|AW279578.1|AW279578
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6455108|gb|AW185791.1|AW185791
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAAGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|7285670|gb|AW598157.1|AW598157
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|5753570|gb|AI960857.1|AI960857
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|23725726|gb|BU760827.1|BU760827
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6666238|gb|AW277697.1|AW277697
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6666292|gb|AW277751.1|AW277751
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTNTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6668069|gb|AW279520.1|AW279520
EST:     AATCACANGAGACATGGTATAAGAGTGACTCTNCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|7589488|gb|AW705261.1|AW705261
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6454130|gb|AW184878.1|AW184878
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|23725830|gb|BU760883.1|BU760883
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|7589651|gb|AW705421.1|AW705421
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTGTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6667401|gb|AW278852.1|AW278852
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6341677|gb|AW164501.1|AW164501
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6667540|gb|AW278991.1|AW278991
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6455152|gb|AW185835.1|AW185835
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|151394400|gb|EV264271.1|EV264271
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6455706|gb|AW186389.1|AW186389
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6724602|gb|AW309001.1|AW309001
EST:     AGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|7589092|gb|AW704873.1|AW704873
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCAAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6455546|gb|AW186229.1|AW186229
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTNTATGGGTC-AAGTTCTTTCCG
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGG-TCGAAGTTCTTTCCG
EST: gi|7588647|gb|AW704438.1|AW704438
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6455060|gb|AW185743.1|AW185743
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAAGCAGAGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6454977|gb|AW185660.1|AW185660
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6668150|gb|AW279601.1|AW279601
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6668016|gb|AW279467.1|AW279467
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|10255077|gb|BE822843.1|BE822843
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|23726487|gb|BU761237.1|BU761237
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|5753462|gb|AI960749.1|AI960749
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTNTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|7589625|gb|AW705395.1|AW705395
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|5342421|gb|AI794705.1|AI794705
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|298194204|gb|HO040852.1|HO040852
EST:     GGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: GGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
EST: gi|6454487|gb|AW185170.1|AW185170
EST:     AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACG                         ACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT
genomic: AATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatatt ... cattctgcagACTATTGCCAAGGCAGTGGGAGACTGGTTTTATGGTCGAAGTTCTTTCCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCATCTAAAGGAATGTTCATAGACTCTTGCTATGCTCACTGCCAAACAGAATCACAGGAGACATGGTATAAGAGTGACTCTCCACAGCTTGCCAATACGgtaagatattgcattattttcttccttttccataatataagcctttttgtgtggtgtttttgttattacttcctttagtattgagttgaaaagataacttgtatgcattacatttacattctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA