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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatatacatatagcatatcaaataagagaattagaggtaaaaagaggtaacattgaccattcattcttatggtccagatgacctatgtcacctct...

Basic information

species Glycine max
transcript GLYMA16G09320.2
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208201508|gb|GE000072.1|GE000072
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193556860|gb|FK512321.1|FK512321
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193500776|gb|FK465357.1|FK465357
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|208269880|gb|GE073086.1|GE073086
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193366244|gb|FK330231.1|FK330231
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|151408190|gb|EV277998.1|EV277998
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193477757|gb|FK442304.1|FK442304
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|208113525|gb|GD911164.1|GD911164
EST:     ATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: ATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193730092|gb|FK663078.1|FK663078
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|208113512|gb|GD911151.1|GD911151
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATA
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATA
EST: gi|207833761|gb|GD808070.1|GD808070
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|208284749|gb|GE085563.1|GE085563
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193560343|gb|FK516794.1|FK516794
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193460123|gb|FK427074.1|FK427074
EST:     TACACAAGGATACGACAAAAATCTTACTTCTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: TACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|208145926|gb|GD943565.1|GD943565
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|254339690|gb|GR857815.1|GR857815
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193647368|gb|FK587583.1|FK587583
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193500358|gb|FK464379.1|FK464379
EST:     GTATACACAGGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193685824|gb|FK626338.1|FK626338
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193591126|gb|FK545587.1|FK545587
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|208198647|gb|GD998468.1|GD998468
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|192320379|gb|FK013469.1|FK013469
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193450502|gb|FK412972.1|FK412972
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCAC
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCAC
EST: gi|208293881|gb|GE092538.1|GE092538
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|207771851|gb|GD745622.1|GD745622
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193637122|gb|FK579021.1|FK579021
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATAATAAAACCAACGAGAGGCATTGGAC
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATA-TAAA-CCA-CGAGAGGCATTGGAC
EST: gi|208156382|gb|GD956762.1|GD956762
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|208241186|gb|GE038728.1|GE038728
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCA
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCA
EST: gi|208057167|gb|GD854258.1|GD854258
EST:     CTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: CTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193312336|gb|FK274314.1|FK274314
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193439215|gb|FK409002.1|FK409002
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193425096|gb|FK389419.1|FK389419
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|57574399|gb|CX547374.1|CX547374
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193366247|gb|FK330234.1|FK330234
EST:     GTTATTACTACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: G-TA-TAC-ACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGAC-TT
EST: gi|208230361|gb|GE031724.1|GE031724
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGTTCTGGGCATACTGTTCCGGAA
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAA
EST: gi|57574752|gb|CX547727.1|CX547727
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|208050931|gb|GD848072.1|GD848072
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|207751726|gb|GD722627.1|GD722627
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|208156142|gb|GD952812.1|GD952812
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193382457|gb|FK349042.1|FK349042
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193445119|gb|FK409297.1|FK409297
EST:     GTATACACAGGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193328739|gb|FK293499.1|FK293499
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|208080044|gb|GD876316.1|GD876316
EST:     GTATACACAAGGATACGACAAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGAC-AAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
EST: gi|193656043|gb|FK606673.1|FK606673
EST:     GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAG                         GGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT
genomic: GTATACACAAGGATACGACAAAAATCTTACTTTTCTGACCGTAAAGgtttgtatat ... tttggtacagGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTT