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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCCCCTGTAGCACCAACTAACCTCTTCAAGCTCTTTTCATCTAAGTCTCATGTCCTATTGTATCCAGGAGGGATGCGTGAGGCTCTTCATAGGAAGgtaaatcccaataagtaaactctttctattgtaagtgagtttcatctttctcattgactcatgattttacatatttgactacttctaaggtctttaactt...

Basic information

species Glycine max
transcript GLYMA16G05570.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05570.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv14s0068g01440.t01 (Vitis vinifera), 5'ss of exon 10
TGCTGCCCCTGTAGCACCAACTAACCTCTTCAAGCTCTTTTCATCTAAGTCTCATGTCCTATTGTATCCAGGAGGGATGCGTGAGGCTCTTCATAGGAAGgtaa-atcccaataagtaaactctttct--------attg-------taagtgagtttcatctttctcattgactcatgattttacatatttgactacttctaaggtctttaactt----------------------------------------------------------------------------------
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TGCAGTTCCTGTCTCAGGGTCTTACTTTTATAAACTTATGTCTTCCAAGTCTCATATTCTACTATATCCAGGAGGCATGCGTGAGGCTCTGCATCGGAAGgtaacattttagtaattacattctacattgaagtacattgctctggataaaagtgtttttttttttcctttaggttcctacaacaaaaattcatataaacatgtgcattatatgtgtgcatggctgtgaaagaaatatgccttagaatttgaagtattaaactcttttttgcaacacccaactgtttacattgtccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15812273|gb|BI784548.1|BI784548
EST:     CTCATGTCCTATTGTATCCAGGAGGGATGCGTGAGGCTCTTCATAGGAAG                         GGTGAAGAATACAAGTTATTCTGGCCTCAACAATCTGAGTTTGTAAGGATG
genomic: CTCATGTCCTATTGTATCCAGGAGGGATGCGTGAGGCTCTTCATAGGAAGgtaaatccca ... taattttcagGGTGAAGAATACAAGTTATTCTGGCCTCAACAATCTGAGTTTGTAAGGATG