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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGTACCAAAATTTGATTACGCAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtctttgttttttgtcttcaaatcaaatcagtatattgataatttttgttaatgtttttagaattgtttagaaa...

Basic information

species Glycine max
transcript GLYMA16G05180.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os11g32490.1 (Oryza sativa), 5'ss of exon 12
TCAGTACCAAAATTTGATTACGCAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtctttgttttttgtcttcaaatcaaatcagtatat--tgataatttttgttaatgtttttagaattgtttagaaa
    ||||| |||||||||||  | || |||||||| ||||| ||||||||||| || || || ||||| ||||||||||||||||| || || || ||||||  ||  | | ||  | |||     |||||| | | | |    || |    |  ||||||     | |  | |   ||||  |||  |            
GTCTTACCAGAATTTGATTACAAAATCGATGTATGATAAACAGCTTGACAGTGGGAAAGGAACACTTCTGCATTTGTGTGATGATGTGATCCAGCAAGAAgta--tggaaccatgggggatttc---tctttgatatatat----aacttgtctttgtatatgccactgacatataa-aatgggtttgcag-----------

upper sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g70390.1 (Oryza sativa), 5'ss of exon 12
TCAGTACCAAAATTTGATTACGCAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtctttgttttttgtcttcaaatcaaatcagtatattgataatttttgtta-----atgtttttagaattgtttagaaa--
    || |||||  | || || || ||||||||||||||||| || || ||||| || || || ||||| ||| | ||||||||||| ||||| ||||||||| ||  |          ||| |    |||  ||     |   || |||| |    | |  | | |||| || | |      || |||  ||||| |   |     
AACATATCAAAACCTAATAACTCAATCAATGTATGACAAACAGCTAGATAGTGGGAAAGGCACACTTCTCCATCTCTGTGATGATGTGATTCAGCAGGAAgtaggtctc-------catattgtagtacttgattcagaataagcatatcagagacttgtgctcacaattattttcatctttgtggtttctgaattctgatgtccag

upper sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os12g29550.1 (Oryza sativa), 5'ss of exon 12
TCAGTACCAAAATTTGATTACGCAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtctttgttttttgtcttcaaatcaaatcagtatattgataatttttgttaatgtttttagaattgtttagaaa-
    || ||||||||||| ||  | ||||||||||||||||| ||||| ||||| || || || || |||||  ||||||||||||| || || || |||||| |   ||  | ||  | |  | || |    |   |||  |  | |||   |   |||  ||| || |       ||  | |||   |  || |  || 
AATATATCAAAATTTGATCACAAAATCAATGTATGACAAACAGCTTGATAGTGGGAAAGGAACACTGCTTCACCTGTGTGATGATGTGATACAGCAAGAAgtacgaaacaaat-gaaacctcttttg-caccataagttgaatatatatct--ttgttatcctgagaact------gatactcttatcttctttcatgaag

upper sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G161168_T01 (Zea mays), 5'ss of exon 12
TCAGTACCAAAATTTGATTACGCAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtctttgttttttgtcttcaaatcaaatcagtatattgataatttttgttaatgtttttagaattgtttagaaa----
    |||||||| || || || || |||||||||||||||||||| || ||||| || || || || || ||  | ||||||||||| ||||||||||| ||| || |   ||   | || || ||| |||| ||      |   |||  ||||    |    | |    ||| | ||| | |||    || ||||        
AACCTACCAAAACTTAATCACTCAATCAATGTATGACAAACAACTAGATAGTGGGAAAGGCACACTCCTCCACCTCTGTGATGATGTGATTCAACAGGAGgtaggtccacactc--tacactcagtg-ctttcttgaggaccaataaaataaatactcactccgttccgatttat-aatttgtttgactttttttattctaagt

upper sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G011136_T01 (Zea mays), 5'ss of exon 12
TCAGTACCAAAATTTGATTACGCAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtctttgttttttgtcttcaaatcaaatcagtatattgataatttttgttaatgtttttagaattgtttagaaa
   ||| || |||||||||||  | ||||||||||||||||| ||||| ||||| || || || |||||||| || || ||||| || || || || |||||| |    || |  |  |     ||  |||            ||  | | |  |  ||| || |    | |    |   |   | |  | |        
AATGTATCAGAATTTGATTACAAAATCAATGTATGACAAACAGCTTGATAGTGGGAAAGGAACTCTTCTTCACTTATGCGATGACGTGATACAGCAAGAAgtatgaaatagttgaaaac----cgta-cttcaaaccacaagctcgtacctatgccttatgttcactgatatc-ccatcatccatggtgtag--------

upper sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G19340.1 (Arabidopsis thaliana), 5'ss of exon 12
TCAGTACCAAAATTTGATTACGCAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagcttgatgcattctgtgtctttgttttttgtcttcaaatcaaatcagtatattgataatttttgttaatgtttttagaattgtttagaaa
|  ||| || || ||||| || |||||||||||||| |||||||| ||||| || | ||| ||||| || ||||||||||||||||| ||||| || ||||||||| || || |||   |   |||       |           |||  |||    ||  | |||  |  |    |                       
TACGTATCAGAACTTGATAACTCAGTCAATGTATGATAAACAACTAGACAGCGGGAGGGGAACGCTACTACATTTGTGTGATGATGTGATTCAGCAAGAAgtaagttcccgcatga-atacattgtaatacaatag---------aaacaaaaagcttacttggattgtaatgcacag----------------------

upper sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 12
TCAGTACCAAAATTTGATTACGCAGTCAATGTATGACAAACAACTTGACAGTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgccagctt-gatgcattctgtgtctttgt----tttttgtcttcaaatcaaatcagtatattgataatttttgttaatgtttttagaattgtttagaaa
|   || || || || || || || || |||||||| || || || || |||||||||||||| |||||||| ||||||||||| || |||||||| ||||||||| | |   | || | ||| |   ||| |      |||| |||||       | ||| |||  |  |  |||||| | |     |    |   |||     
TGCATATCAGAACTTAATCACACAATCCATGTATGATAAGCAGCTGGATAGTGGAAAGGGTACTCTTCTTCACTTGTGTGATGACGTGATTCAACAAGAAgtaagttctaaaatagaggaattttaattctatccaatattttggtctttcttgatagtcaatatgatttttttttttggtgaaaccatacagaaaattt-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51345191|gb|CO985924.1|CO985924
EST:     GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAA                         GTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT
genomic: GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgcca ... taatgtgtagGTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT
EST: gi|7691356|gb|AW759414.1|AW759414
EST:     GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAA                         GTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT
genomic: GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgcca ... taatgtgtagGTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT
EST: gi|10237257|gb|BE806145.1|BE806145
EST:     GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAA                         GTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT
genomic: GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgcca ... taatgtgtagGTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT
EST: gi|22522206|gb|BU081017.1|BU081017
EST:     ATTCAACAGGAA                         GTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT
genomic: ATTCAACAGGAAgtaagtgcca ... taatgtgtagGTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT
EST: gi|27426582|gb|CA938102.1|CA938102
EST:     GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAA                         GTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT
genomic: GTGGAAAGGGTACGCTTCTTCATTTGTGTGATGATGTCATTCAACAGGAAgtaagtgcca ... taatgtgtagGTCAAAGAGGTTATAATTTCATTCTTTATTCTGATGGAACAGGGCAAAGCT