Sequence
atgc intronic sequence ATGC exonic sequenceATTCTTTGCCTCCCATGCCTGTAGATGGTGACACATGGTCTGTCATGCAGAGTTGGGCTCTGCCTACGAGATCGTTTATGGAGTTTGTAATGTTCTCTAGgtaaacttagttcattttgtaaaataagaaaattgctctcttgtaacttgtttgagagttaagtaactgatgtaaactaccatttgtgcag
Basic information
species | Glycine max |
transcript | GLYMA16G03340.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G03340.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g43380.1 (Oryza sativa), 5'ss of exon 7
ATTCTTTGCCTCCCATGCCTGTAGATGGTGACACATGGTCTGTCATGCAGAGTTGGGCTCTGCCTACGAGATCGTTTATGGAGTTTGTAATGTTCTCTAGgtaaacttagttcattttgtaa---aataagaaa-attgctctctt--gtaacttgtttgagagttaagtaactgatgtaaactaccatttgtgcag---
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ATACCCTGCCACTAATGCCTAATGATGGAGACACTTGGTCTGTGATGCAAAGCTGGGTTTTGCCTACGAGATCATTCCTGGAATTTGTAATGTTCTCAAGgtgcacattatctcttttggaattcaatagtcaacatagcagtattaagtggaagatgtcactagctaactgttggtgtatacatttcaaagcacaagta
upper sequence: GLYMA16G03340.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv15s0046g01620.t01 (Vitis vinifera), 5'ss of exon 12
ATTCTTTGCCTCCCATGCCTGTAGATGGTGACACATGGTCTGTCATGCAGAGTTGGGCTCTGCCTACGAGATCGTTTATGGAGTTTGTAATGTTCTCTAGgta---aacttagt--tcattttgtaaa-ataagaaaattgctctcttgtaacttgtttgagagttaagtaactgatgtaaactaccatttgtgcag
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ATTCCTTACCACCTATGCCTGTAGATGGAGATGCATGGTCTGTCATGCAGAGCTGGGCTTTGCCAACCCGATCCTTCCTAGAGTTTGTAATGTTCTCAAGgtactggatatagcaattgaggggtgtatacaggcaagtttagcccatttttcatctttcaaatct---taatttgaatattgtaccatctgcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19271189|gb|BM887445.1|BM887445EST: TCGTTTATGGAGTTTGTAATGTTCTCTAG AATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTCAAC
genomic: TCGTTTATGGAGTTTGTAATGTTCTCTAGgtaaacttag ... atttgtgcagAATGTTTGTGGATGCATTGGATGCGCAAATGTATGATGAACACCATTCAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCTTTGCCTCCCATGCCTGTAGATGGTGACACATGGTCTGTCATGCAGAGTTGGGCTCTGCCTACGAGATCGTTTATGGAGTTTGTAATGTTCTCTAGgtaaacttagttcattttgtaaaataagaaaattgctctcttgtaacttgtttgagagttaagtaactgatgtaaactaccatttgtgcag
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