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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCACTGCATGACTTCCTTCACCTACCTGATGAGTGTAGTAAACCATTGATATGGAATTCACGAGTGAAAATTGCTTTGGGGATTGCACGCGCTTTAGAgtaagttagttgtttgttgatgtagacagaagatcttgatattacatttataagaaggttttgtgctatttcatattaggctgaaccttatgaatgaatc...

Basic information

species Glycine max
transcript GLYMA16G01790.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845159|gb|BF068320.1|BF068320
EST:     TATGGAATTCACGAGTGAAAATTGCTTTGGGGGATTGCACGCGCCTTAGA                         GTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTC
genomic: TATGGAATTCACGAGTGAAAATTGCTTT-GGGGATTGCACGCGCTTTAGAgtaagttagt ... tttctcccagGTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTC
EST: gi|208098688|gb|GD895991.1|GD895991
EST:     ATATGGAATTCACGAGTGAAAATTGCTTTGGGGATTGCACGCGCTTTAGA                         GTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAA
genomic: ATATGGAATTCACGAGTGAAAATTGCTTTGGGGATTGCACGCGCTTTAGAgtaagttagt ... tttctcccagGTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAA
EST: gi|15813078|gb|BI785353.1|BI785353
EST:     ATATGGAATTCACGAGTGAAAATTGCTTTGGGGATTGCACGCGCTTTAGA                         GTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTC
genomic: ATATGGAATTCACGAGTGAAAATTGCTTTGGGGATTGCACGCGCTTTAGAgtaagttagt ... tttctcccagGTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTC
EST: gi|15814309|gb|BI786584.1|BI786584
EST:     ATATGGAATTCACGAGTGAAAATTGCTTTGGGGATTGCACGCGCTTTAGA                         GTACCTACATGAAGT
genomic: ATATGGAATTCACGAGTGAAAATTGCTTTGGGGATTGCACGCGCTTTAGAgtaagttagt ... tttctcccagGTACCTACATGAAGT
EST: gi|24136261|gb|BU926771.1|BU926771
EST:     ATATGGAATTCACGAGTGAAAATTGCTTTGGGGATTGCACGCGCTTTAGA                         GTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTC
genomic: ATATGGAATTCACGAGTGAAAATTGCTTTGGGGATTGCACGCGCTTTAGAgtaagttagt ... tttctcccagGTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTC
EST: gi|254326942|gb|GR836551.1|GR836551
EST:     ATATGGAATTCACGAGTGAAAATTGCTTTGGGGATTGCACGCGCTTTAGA                         GTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTC
genomic: ATATGGAATTCACGAGTGAAAATTGCTTTGGGGATTGCACGCGCTTTAGAgtaagttagt ... tttctcccagGTACCTACATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTC