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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATCTGCATGACATGCTCCATTTTGCTGAAGATAGCAGCAAGGCATTGTCTTGGAATGCCCGTGTACGCATAGCACTTGGCACAGCCCGGGCTTTAGAgtatgttacattcacatatctgacatattaagtctctccttggcatggccttgactggctactccacccccctgcttttccctcaagtatatttgttttagccttgtagagtgagttagcatgtcacattcaggctaatttctcaagttatgctttgtctatcag

Basic information

species Glycine max
transcript GLYMA15G11820.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208277776|gb|GE074867.1|GE074867
EST:     CAGCCCGGGCTTTAGA                         GTACCTGCATGAAGTGTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATC
genomic: CAGCCCGGGCTTTAGAgtatgttaca ... tgtctatcagGTACCTGCATGAAGTGTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATC
EST: gi|15813444|gb|BI785719.1|BI785719
EST:     TCTTGGAATGCCCGTGTACGCATAGCACTTGGCACAGCCCGGGCTTTAGA                         GTACCTGCATGAAGTGTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATC
genomic: TCTTGGAATGCCCGTGTACGCATAGCACTTGGCACAGCCCGGGCTTTAGAgtatgttaca ... tgtctatcagGTACCTGCATGAAGTGTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATC
EST: gi|4396176|gb|AI495173.1|AI495173
EST:     TCTTGGAATGCCCGTGTACGCATAGCACTTGGCACAGCCCGGGCTTTAGA                         GTACCTGCATGAAGTGTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATC
genomic: TCTTGGAATGCCCGTGTACGCATAGCACTTGGCACAGCCCGGGCTTTAGAgtatgttaca ... tgtctatcagGTACCTGCATGAAGTGTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATC
EST: gi|7589478|gb|AW705251.1|AW705251
EST:     TCTTGGAATGCCCGTGTACGCATAGCACTTGGCACAGCCCGGGCTTTAGA                         GTACCTGCATGAAGTGTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATC
genomic: TCTTGGAATGCCCGTGTACGCATAGCACTTGGCACAGCCCGGGCTTTAGAgtatgttaca ... tgtctatcagGTACCTGCATGAAGTGTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATC