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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAGgttcgaatatacatctgaatatttttggaaagtggaaatacttagcactttgactgaacataaccaaagttaatgttcactttttgtttggttgcatacag

Basic information

species Glycine max
transcript GLYMA15G07480.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07480.2 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 5'ss of exon 12
ATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAGgttcg----------aatatacatctgaatatttttggaaagtggaaatacttagcactttgactgaacata---accaaagttaatgttcactt-tttgtttggttg--catacag--------------------------------------------------------------------------------
|| |||||||||||||||||||||||||||||| | ||| ||||| |||| ||||||||||| |||||  |          || | | |         |||   |   |   | |   ||||| |     |   ||||   |    | | ||| |  || | | ||| | |     | || |                                                                                 
ATCTTCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGgtcagtcctgcgaataacaaatactccctccgtttcatattataagactttctagcattgcccatattcatatagatgttaataaatctagacatatgtgtctagaaagtcttataatataaaacggagaaagtatgtttttatgaaataaattctcaagtagtctatctgagccgttttgacatttgtgaatgcag

upper sequence: GLYMA15G07480.2 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G041181_T01 (Zea mays), 5'ss of exon 12
ATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAGgttcgaatatacatctgaatatttttggaaagtggaaatacttagcactttgactgaacataaccaaagttaatgttcactttttgtttggttgcatacag
|| ||||||||||||||||||||| |||||||  | ||| ||||| | || |||||||| || |||||  |                ||||     |       | || |      |||   ||| | |         |  |   |  ||| || |   || | |||
ATATTCTACTTTGTTGGATTTGGACTGTTCTGTCTGGAATCATTGCTTAGCATCTGGGTCATCCAGgtcag----------------ttttctattatcaaccgttctaattttcctgaaccaacttcagtgtgacatacttgagcccttt-ttggaccgcgtgcag

upper sequence: GLYMA15G07480.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv00s0301g00030.t01 (Vitis vinifera), 5'ss of exon 12
ATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAGgttcgaatatacatctgaatatttttggaaagtggaaa---tacttagcactttgactgaacataaccaa--agttaatgttcactttttgtttggttgcatacag-------
|| ||||||||  |||| |||||| |||||||  ||||| || || |||| ||||||||||||||||| | | |   | |    ||   |    |    |||||   ||  || | ||   | |      || ||   || |  |||||||| ||| | | ||| ||    |       
ATCTTCTACTTCATTGGGTTTGGAATGTTCTGTGTTGAATCAGTGCTCAGCATCTGGGTTATTCAGgtccaacttctctttcccattcctaataatcacggaaagcatagctacctctgctaataggatgaatcatgcagctcttgttcactgtttctgttgtttcacctggtttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21994675|gb|BQ786203.1|BQ786203
EST:     GATTTGGATTGTTCTGCATTGAAACATTGATCAGGATCTGGGTTATTCAG                         CAAGTATATATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAAATGAAGCAG
genomic: GATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAGgttcgaatat ... ttgcatacagCAAGTATATATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAGCAG
EST: gi|10255229|gb|BE822995.1|BE822995
EST:     GATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAG                         CAAGTATATATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAGCAG
genomic: GATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAGgttcgaatat ... ttgcatacagCAAGTATATATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAGCAG
EST: gi|6846844|gb|AW349134.1|AW349134
EST:     GATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAG                         CAAGTATATATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAGCAG
genomic: GATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAGgttcgaatat ... ttgcatacagCAAGTATATATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAGCAG
EST: gi|4284462|gb|AI440784.1|AI440784
EST:     GATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAG                         CAAGTATATATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAGCAG
genomic: GATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAGgttcgaatat ... ttgcatacagCAAGTATATATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAGCAG
EST: gi|16343904|gb|BI969499.1|BI969499
EST:     GATTTGGATTGTTGTGCATTGAAACATTGATCAGTATCTGGGTTATTCAG                         CAAGTATATATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAGCAG
genomic: GATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAGgttcgaatat ... ttgcatacagCAAGTATATATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAGCAG