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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTTTCTTGCGGAAGCGCATGGATGAAGTTATAGGGAACTTTCTACGAGAAGGCCTTGAACCCTCAGAGAACATGATTGCACACCTCATAGAAATGGAGgtatgcaccaaaagagctcatcagaatttggttcttgtgcctaaacttggtttctcgagtcatgcccaaattgtgttttgagatataaccaaatttctag...

Basic information

species Glycine max
transcript GLYMA15G06380.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G14120.3 (Arabidopsis thaliana), 5'ss of exon 13
CCCTTTCTTGCGGAAGCGCATGGATGAAGTTATAGGGAACTTTCTACGAGAAGGCCTTGAACCCTCAGAGAACATGATTGCACACCTCATAGAAATGGAGgtatgcaccaaaagagctcatcagaatttggttcttgtgcctaa-acttggtttctcgagtcatgcccaaattgtgttttgagatataaccaaatttctag-
 ||  || |||  |||||||||||||| ||||| ||||||||||| |||||||| |||||||| ||  ||   |||||   | | || || |||||||||||||| |     | |  | |  |         || ||   ||||      || |    |    | |  | |||| ||  |||  | |       |  |    
TCCAGTCCTGCAAAAGCGCATGGATGAGGTTATTGGGAACTTTCTGCGAGAAGGTCTTGAACCTTCGCAGGCAATGATCCGAGATCTTATTGAAATGGAGgtatgtat--ggataatttaagatccacacaatcatgaatctaatggccagtattattaaatttacttagattgcgtactgatttttttttttgtcacactg

upper sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 12
lower sequence: AT4G33650.1 (Arabidopsis thaliana), 5'ss of exon 12
CCCTTTCTTGCGGAAGCGCATGGATGAAGTTATAGGGAACTTTCTACGAGAAGGCCTTGAACCCTCAGAGAACATGATTGCACACCTCATAGAAATGGAGgtatgcacca-aaagagctcatcagaatttggttcttgtgcctaaacttggtttctcgagtcatgcccaaattgt-----gttttgagatataaccaaatttctag--------------------------------------------------------------------------------------
 ||  || | || |||||||||||||| ||||| ||| | || || |||||||| ||||||||||||||    ||||| |   |  |||| || |||||||| || |  |  ||  |   |||  |  |||  |   ||  ||  | |  || |   ||| |  | | ||  |||     | || | ||  |     ||| |  ||                                                                                      
TCCAGTCCTACGAAAGCGCATGGATGAGGTTATCGGGGATTTCCTGCGAGAAGGTCTTGAACCCTCAGAAGCAATGATCGGGGATATCATTGATATGGAGgtctgtataatgaattgaaaatcctacgttgagttgagtttctctattgtgtataaagagcccagactaatatgttggttgattagggaccttttttaatcttgagcagtgatttcctcgtttttgattgattagtttctttgaactaaagtattagtgatggtatcataatttcttgaatgtcgtttgcag

upper sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 13
CCCTTTCTTGCGGAAGCGCATGGATGAAGTTATAGGGAACTTTCTACGAGAAGGCCTTGAACCCTCAGAGAACATGATTGCACACCTCATAGAAATGGAGgtatgcaccaaaagagctcatcagaatttggttcttgtgcctaaacttg-gtttctcgagtcatgcccaaattgtgttttgagatataaccaaatttctag-
 ||| |  || | ||||||||||| |||||||| || |||||| | ||||||||||||||||| |||||||  |||||||  ||| | || |||||||||||||| |  |||  |    ||   |||     |    ||   | | |||   |  || |||       |||   | ||   ||  ||     ||  ||    
TCCTATTCTGAGAAAGCGCATGGACGAAGTTATGGGAAACTTTTTGCGAGAAGGCCTTGAACCGTCAGAGACAATGATTGGGCACATTATTGAAATGGAGgtatg-atgaaatcaaaatattt-aatcattctgaactgttgacatttgcagtattctagttgaaaataaaaactattgcaagtaattgtataaactcacct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193351152|gb|FK316728.1|FK316728
EST:     AAGGCCTTGAACCCTCAGAGAACATGATTGCGCACCTCATAGAAATGGAG                         ATGGACTACATAAACACTTCCCACCCAAATTTTATTGGTGGAAGCAAGGCA
genomic: AAGGCCTTGAACCCTCAGAGAACATGATTGCACACCTCATAGAAATGGAGgtatgcacca ... aattctgcagATGGACTACATAAACACTTCCCACCCAAATTTTATTGGTGGAAGCAAGGCA
EST: gi|208142641|gb|GD943997.1|GD943997
EST:     AAGGCCTTGAACCCTCAGAGAACATGATTGCACACCTCATAGAAATGGAG                         ATGGACTACATAAACACTTCCCACCCAAATTTTATTGGTGGAAGCAAGGCA
genomic: AAGGCCTTGAACCCTCAGAGAACATGATTGCACACCTCATAGAAATGGAGgtatgcacca ... aattctgcagATGGACTACATAAACACTTCCCACCCAAATTTTATTGGTGGAAGCAAGGCA