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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTACGgtatggtcatactgtttttctatttgttggtttaagttaatttcatttggaaataatgagttttaaattttcag

Basic information

species Glycine max
transcript GLYMA15G05080.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05080.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os03g45770.2 (Oryza sativa), 5'ss of exon 11
TGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTACGgtatggtcatac-tgtttttctatt------tgttggt------ttaagttaatttcatttggaaataatgagttttaaattttcag---------
|||  | ||| | ||||||||| ||||||| || ||||| || |||||||||||| |||| |||||||| || |||||||| ||  | || ||||||   | |  ||| ||| |  |      | ||||        ||    ||| || | | || ||| ||| ||  | ||||             
TGTGAGGACATCTATATCAATGCAGTTCTTCCCGCGCTTTTTCTTGCTGTATTTCTTGGTTTTCCACATTTACTTCTTCTCGTACACATATGgtatgactacatatgtctttttggtgacctatattggcaagaaactactggaatatcctatcgatata-tgacttgcatatttctgtatttatcag

upper sequence: GLYMA15G05080.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM5G814310_T01 (Zea mays), 5'ss of exon 3
TGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTACGgtatggtcatactgtttttctatttgttggtttaa--gttaatttcatttggaaataat----gagttttaaattttcag---------
||| || ||| | ||||| ||| |||||||||| |||||||| |||||||||||  |||| ||||| || || |||||||| ||| | || ||||||    ||      |||| |||  ||  | ||   || |||   |   || | | |    | | ||||    ||  |         
TGTGCGGACATCCATATCGATGCAGTTCTTTCCACGCTTCTTCTTGCTGTATTTTTTGGTTTTCCATATCTACTTCTTCTCATATACCTATGgtatgtgtgtatcaaacttcttttttctgactgaactattgattaactaatgacacatttctggcgctttatgacttatgctttaccag

upper sequence: GLYMA15G05080.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G60995.1 (Arabidopsis thaliana), 5'ss of exon 13
TGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTACGgtatggtcatactgtttttctatttgttggtttaagttaatttcatttggaaataatgagttttaaattttcag---------------
|||| | ||||||||||| ||||||||||| || || ||||| |||||||| ||| |||| ||||| || ||||||||||| ||||| || |||| |   ||   ||||| |  | | || || | | |||| | |   || || |   ||    |  | || | |               
TGTCAGGACACCAATATCGATGAAGTTCTTCCCGCGTTTCTTCTTGCTGTACTTCTTGGTGTTCCATATTTATTTCTTCTCATATGCATATGgtaagag-atgtggttttacgttatatttgtctca-ttaactac---tgaaactgcagacgcgttcacttactgcataactctccacag

upper sequence: GLYMA15G05080.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S96_202V6.1 (Physcomitrella patens), 5'ss of exon 13
TGTCCGAACACCAATATCAATGAAGTTCTTTCCTCGCTTCTTTTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTACGgtatggtcat--actgtttttctatttg---ttggtttaagttaatttcatttggaaataatgagttt-taaattttcag--------------------
 ||  | || ||  |||| ||| |||||||||||||||||||||| || |||||| |||  |||||||| || |||||||||||| | |||||||   |  |  |     || ||||||    |  || |  | |  | |   || | | ||||  | || |   | | | |                    
CGTGAGGACGCCCCTATCGATGCAGTTCTTTCCTCGCTTCTTTTTTCTCTATTTCATGGCTTTCCACATTTACTTCTTCTCTTATACCTACGgtaaatttctttatcagcttcctatttcacctctgtgtttgcttttcttccttagcagtaatttgattgttgctgtgctgttgcttaaagttcatctatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13480752|gb|BG510095.1|BG510095
EST:     TTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTACG                         GTTTTTCGTATTTGGCTCTTTCTACAACCGCGGCTTTTATGCAACACCTTA
genomic: TTTGCTGTATTTCCTGGTCTTCCACATATATTTCTTCTCTTATGCTTACGgtatggtcat ... aaattttcagGTTTTTCGTATTTGGCTCTTTCTACAACCGCGGCTTTTATGCAACACCTTA