Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTTCAATCTATTGTGGCTTAATCTACAATGAATTCTTTTCTGTTCCCTTTCACATATTTGGTGCATCGGCTTACAAATGCCGTGATAGTTCATGCAGgtgttctatttgtctcttcgagtctatgattttgatgtcagttaaatacttaaaatgtttttttgtcttaatatctagttatgtaatggcttacatattg...

Basic information

species Glycine max
transcript GLYMA15G04970.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04970.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv06s0004g03450.t01 (Vitis vinifera), 5'ss of exon 12
TGTTTTCAATCTATTGTGGCTTAATCTACAATGAATTCTTTTCTGTTCCCTTTCACATATTTGGTGCATCGGCTTACAAATGCCGTGATAGTTCATGCAGgtgttctatttgtctcttcgagtctatgattttgatgtcagttaaatacttaaaatgtttttttgtcttaatat-ctagttatgtaatggcttacatattg-----
| |||||||| || ||||| || || |||||||||||||| ||||| |||| |||||||||||||| ||| ||||| ||||| || |||  | | |||||||    ||| |   | ||| |  || |  |||   |  ||     ||| | |  ||| | ||   | | |  || |  | | | ||||   | |   | ||     
TATTTTCAATTTACTGTGGATTGATTTACAATGAATTCTTCTCTGTACCCTATCACATATTTGGTGGATCTGCTTATAAATGTCGAGATGCTACCTGCAGgta---tatgttgttattccatccttt--tttccttagcaaaagcatagt-agtatggtcttggctgtgagcatgcctgatttctaatctgtcatccaatggtttt