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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAGgtgctttttgaaaactgatcttgttcactttcacattgacttgcttgatattataattaagtaaaattgatcttttattgcag

Basic information

species Glycine max
transcript GLYMA15G04780.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51342650|gb|CO983616.1|CO983616
EST:     GGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAG                         CATGCCCAAAGATGAAGCACAACTATACGCGGCAAATGAACT
genomic: GGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAGgtgctttttg ... tttattgcagCATGCCCAAAGATGAAGCACAACTATACGCGGCAAATGAACT
EST: gi|8403614|gb|BE059248.1|BE059248
EST:     TTTTACATATTTTACAG                         CATGCCCAAAGATGAAGCACAACTATATGCGGCAAATGAACT
genomic: TTTTACATATTTTACAGgtgctttttg ... tttattgcagCATGCCCAAAGATGAAGCACAACTATACGCGGCAAATGAACT
EST: gi|213595685|gb|DB977967.1|DB977967
EST:     GGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAG                         CATGCCCAAAGATGAAGCACAACTATACGCGGCAAATGAACT
genomic: GGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAGgtgctttttg ... tttattgcagCATGCCCAAAGATGAAGCACAACTATACGCGGCAAATGAACT
EST: gi|22928907|gb|BU546046.1|BU546046
EST:     GGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAG                         CATGCCCAAAGATGAAGCACAACTATACGCGGCAAATGAACT
genomic: GGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAGgtgctttttg ... tttattgcagCATGCCCAAAGATGAAGCACAACTATACGCGGCAAATGAACT
EST: gi|120529441|gb|EH257575.1|EH257575
EST:     GGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAG                         CATGCCCAAAGATGAAGCACAACTATACGCGGCAAATGAACT
genomic: GGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAGgtgctttttg ... tttattgcagCATGCCCAAAGATGAAGCACAACTATACGCGGCAAATGAACT
EST: gi|6483197|gb|AW202379.1|AW202379
EST:     GGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAG                         CATGCCCAAAGATGAAGCACAACTATACGCGGCAAATGAACT
genomic: GGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAGgtgctttttg ... tttattgcagCATGCCCAAAGATGAAGCACAACTATACGCGGCAAATGAACT
EST: gi|207817648|gb|GD792661.1|GD792661
EST:     GTTTTACATATTTTACAG                         CATGCCCAAAGATGAAGCACAACTATACGCGGCAAATGAACT
genomic: GTTTTACATATTTTACAGgtgctttttg ... tttattgcagCATGCCCAAAGATGAAGCACAACTATACGCGGCAAATGAACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAGgtgctttttgaaaactgatcttgttcactttcacattgacttgcttgatattataattaagtaaaattgatcttttattgcag

- - - - - - - - - - -  GGTGGA