1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTTGATGGCCTTATCCGTCTCATGGAAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAGgttatatttcttctgcaaggcctgtctttgagtgtcatatttctttagctgggaaagtatctttactttctcttccctcggttacttacttgtgtatctttaaatttcag
species | Glycine max |
transcript | GLYMA15G04500.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CCGTCTCATGGAAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAG GTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAGEST: gi|213604211|gb|DB974253.1|DB974253
genomic: CCGTCTCATGGAAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAGgttatatttc ... taaatttcagGTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAG
EST: CTTGGAAACCCAG GTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAGEST: gi|21676124|gb|BQ628475.1|BQ628475
genomic: CTTGGAAACCCAGgttatatttc ... taaatttcagGTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAG
EST: CCGTCTCATGGAAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAG GTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAGEST: gi|22928257|gb|BU545396.1|BU545396
genomic: CCGTCTCATGGAAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAGgttatatttc ... taaatttcagGTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAG
EST: CCGTCTCATGGAAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAG GTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAG
genomic: CCGTCTCATGGAAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAGgttatatttc ... taaatttcagGTGAATTTACAATGACTGAACTTGCTGAGACAGTTAAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGATGGCCTTATCCGTCTCATGGAAGGATCAAACACCGGACCAATCAACCTTGGAAACCCAGgttatatttcttctgcaaggcctgtctttgagtgtcatatttctttagctgggaaagtatctttactttctcttccctcggttacttacttgtgtatctttaaatttcag
- - - - - - - - - - CATGGA
- - - - - - - - - - - TGGAAG