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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcattcagagcatttattgaacatatagaagtgcatagttatggggtggggttatttccataaggtttactgcaaaatttgacttgtgtcattag...

Basic information

species Glycine max
transcript GLYMA15G03190.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03190.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv09s0002g01560.t01 (Vitis vinifera), 5'ss of exon 12
---GCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagt-cattcagagcatttattgaacatatagaagtgcatagttatg---gggtggggttatttccataaggtttactgcaaaatttgacttgtgtcattag
    ||||   |||| ||  | |||||||| |||||||| ||||||||||||||||||||  || |  | |||  |||||      ||||  ||||  |||| |||||| ||   |||  |   | |     |       | | ||| | |     | | |   |       ||||   || |  ||  |||    || | |||   
AACACCTGTAAGGCCGCCATCCCCAGTGTCAGATGGTTCATTCTATTTTCCAACTAATGTTCCTGCCATCCCACATATGC---ATGTGCCTGTGGGGGTTGGGgtaagtgcagcaagacaaaccaatatgttttgttccttacttagctttcctcagcttgaacttcaaatctaagtgcta-tctaaggtttttgatgggacat---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12688837|gb|BG155173.1|BG155173
EST:     CTAATGTAACTACTG-ACCAAGTATGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
genomic: CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
EST: gi|58016071|gb|CX702813.1|CX702813
EST:     CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
genomic: CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
EST: gi|57574899|gb|CX547874.1|CX547874
EST:     CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
genomic: CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
EST: gi|15815082|gb|BI787357.1|BI787357
EST:     GTATGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
genomic: GTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
EST: gi|31561922|gb|CD487760.1|CD487760
EST:     CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
genomic: CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
EST: gi|192295054|gb|FG986773.1|FG986773
EST:     CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
genomic: CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
EST: gi|51335818|gb|CO979684.1|CO979684
EST:     CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
genomic: CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA
EST: gi|214010103|gb|DB989475.1|DB989475
EST:     CTAATGTAACTACTGAACCAAGTAAGCCAGGCATGCCCATGGGTATTGGA                         ATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATAGTCAGGTA
genomic: CTAATGTAACTACTGTACCAAGTATGCCAGGCATGCCCATGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTAGTCCACAACCGGTCATATATAATCCTCAGGTA