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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAACAACTAAGAAGACTATAACAAAAAGGGCTTTGAAAGCATCTGGTCAGTCAGATCTTTCTGGAAATGCCTCAAAAGACCTTCTCCTAATGCACAAAgtaatttgccattttgatctttgaacatgttattgttcatttgttcttttgggcaaatgaagtccagtgctaatcatgtttttgaatttgttgcatatgt...

Basic information

species Glycine max
transcript GLYMA15G00250.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G16710.1 (Arabidopsis thaliana), 5'ss of exon 12
AGGAACAACTAAGAAGACTATAACAAAAAGGGCTTTGAAAGCATCTGGTCAGTCAGATCTTTCTGGAAATGCCTCAAAAGACCTTCTCCTAATGCACAAAgtaatttgccattttgatctttgaacatgttattgttcatttgttcttttgggcaaatgaagtccagtgctaatcatgtttttgaatttgttgcatatgt-------------------
||||| |   |||||  | || ||||| |||||| | ||||||||||| ||||| ||| | ||||| ||||| || |||||||| || |||||||| |||||| |    |||||   ||| || ||  ||  ||       | |    ||  | || |    |    |  |  |  ||  ||||  || || |   || |                   
AGGAATACTCAAGAAACCCATTACAAAGAGGGCTCTTAAAGCATCTGGCCAGTCGGATTTCTCTGGGAATGCTTCCAAAGACCTGCTACTAATGCATAAAgtagt----catttctttctatgcactagtcctttcctgcatatcagcttaagtaattcgtttttttttttttttttgcctttgtgttcgt-gttaatattatttctgtttgtgtttag

upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 11
AGGAACAACTAAGAAGACTATAACAAAAAGGGCTTTGAAAGCATCTGGTCAGTCAGATCTTTCTGGAAATGCCTCAAAAGACCTTCTCCTAATGCACAAAgtaatt-tgccatttt-gatctttgaacatgttattgttcatttgttc------ttttgggcaaatgaagtcca-gtgctaatcatgtttttgaatttgttgcatatgt
|||||| || || ||||||||||||||||||||| | || ||||| ||||| || ||||||||||| ||||| ||||| ||  | || |||||||| ||||||||  |   ||||  || |||  | | | | | | ||  ||| | |      |||||   |    | |   | ||||  | |||||  |  ||||| |         
AGGAACTACCAAAAAGACTATAACAAAAAGGGCTCTAAAGGCATCCGGTCAATCTGATCTTTCTGGCAATGCTTCAAAGGATTTACTACTAATGCATAAAgtaatcataaaatttcagaccttccagcttatgaatttttctttctccaaataattttgcatattcaatgcataagtgcataacatgtggtccaattttt---------