Sequence
atgc intronic sequence ATGC exonic sequenceATCACGGTTGGTTGTGAACCAGAACAAGAAAAATCTGTTGGAAAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTCGTTAAGgttgggttgcattaaaatttgaaaaattcaatattattctgttatttataactttgtactctatctttctaattgtctgccaaaaatagggtactgattctcatctaacctgtttattgtgaaatgttgtattaacttttacaagcatgctcccttgtag
Basic information
species | Glycine max |
transcript | GLYMA14G06340.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 12
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 12
ATCACGGTTGGTTGTGAACCAGAACAAGAAAAATCTGTTGGAAAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTCGTTAAGgttgggttgcattaaaatttgaaaaattcaatattattctgttatttataactttgtactctatctttctaattgtctgccaaaaatagggtactgattctcatctaacctgtttattgtgaaatgttgtattaacttttacaagcatgctcccttgtag
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ATCTCGGCTTGTTGTGAATCAAAACAAAAAGAACCTCTTGGAAAACTGGTTGGCAGAGGATAAGTTAGAATGCAGTGAAGAACTCGGAGACCTTGTCAAAgtaatcttaaaatgaccattttcatttaaagtgtc-tcctatgggcttctttagtatgctgtaacggtaatattttctgattcag---------------------------------------------------------------------------
upper sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 12
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 12
ATCACGGTTGGTTGTGAACCAGAACAAGAAAAATCTGTTGGAAAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTCGTTAAGgttgggttgcattaaa--atttgaaaaattcaatattattctgttatttataactttgtactctatctttctaattgtctgccaaaaatagggtactgattctcatctaacctgtttattgtgaaatgttgtattaacttttacaagcatgctcccttgtag
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ATCTCGGCTGGTTGTGAACCAAAACAAGAAGAACCTCCTGGAAAACTGGTTGGCAGAGGATAAACTAGAATGCAGTGAAGAACTTGGAGACCTTGTGAAGgtaatcttgaaatggacgatttt----attcaaaatgtgtgatatgtctcctatggtgtgttgtgacgataaacctttctgttccag---------------------------------------------------------------------------
upper sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 12
ATCACGGTTGGTTGTGAACCAGAACAAGAAAAATCTGTTGGAAAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTCGTTAAGgttgggttgcattaaaatttgaaaaattcaatattattctgttatttataactttgtactctatctttctaattgtctgccaaaaatagggtactgattctc---atctaacc--tgtttattgtgaaatgttgtattaacttttacaagcatgctccctt-gtag
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ATCACGCCTGGTTGTGAATCAGAACAAGAAGAATCTTTTGGAGAATTGGTTAGCAGAGGACAAGCTGGAGTGCAGTGAGGAACTTGGGGATCTAGTGAAGgtt----tgaaatgcaattggaga---tgattattttttgtccacttaagacaattcttgttgggatgctaatt-tgagtttattttattatttttatcctgctaatttaaatgatttttttttttaaatataattttgacattgaaaaccatgttttttttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20815168|gb|BQ299646.1|BQ299646EST: TGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTCGTTAAG ACTGTGGACAATGATCTTGCTTTAAAAATATATATCAAAGCCAGAGCTACT
genomic: TGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTCGTTAAGgttgggttgc ... tcccttgtagACTGTGGACAATGATCTTGCTTTAAAAATATATATCAAAGCCAGAGCTACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCACGGTTGGTTGTGAACCAGAACAAGAAAAATCTGTTGGAAAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTCGTTAAGgttgggttgcattaaaatttgaaaaattcaatattattctgttatttataactttgtactctatctttctaattgtctgccaaaaatagggtactgattctcatctaacctgtttattgtgaaatgttgtattaacttttacaagcatgctcccttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC