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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGCCATGCAAATGAGAAAAACTTTGTTGGCCTTACAGTAAGCAGTGAATACATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTGTGTACCACAAGgtttgtggttttcaatcatgtgtcgttttcttgtgcatttgccttttatggtactgaggattcaactgcccttttcag

Basic information

species Glycine max
transcript GLYMA14G05430.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G05430.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 5'ss of exon 12
CAAAGGCCATGCAAATGAGAAAAACTTTGTTGGCCTTACAGTAAGCAGTGAATACATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTGTGTACCACAAGgtttgtggttttcaatcatgtgtcgtt---ttcttgtgcatttgccttttatggtactgagg-attcaactgcccttttcag------------------
|| ||| ||  | |||||||| ||||| || |||||  | |||| ||||||||| ||| | ||||||||||||||||| || ||||| || ||||| |||||| || ||     ||| |    |      || |  |||||||  || ||||  ||   |   |||  |  |   || |  |                  
CAGAGGACACACTAATGAGAAGAACTTCGTGGGCCTCTCTGTAAACAGTGAATATATTTCTTGTGGCAGTGAAACAAACGACGTCTTCGTCTACCATAAGgttagtagtacctgatcttaaaacagccaattttcatgcattttactattatactaagaatccatttgatagtaattctaggaaacgcttttactatttt

upper sequence: GLYMA14G05430.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S86_153V6.1 (Physcomitrella patens), 5'ss of exon 12
CAAAGGCCATGCAAATGAGAAAAACTTTGTTGGCCTTACAGTAAGCAGTGAATACATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTGTGTACCACAAGgt--ttgtggttttcaatcatgtgtcgttttcttgtgcatttgccttttatggtactgaggattcaactgcccttttcag---------------------
 ||||| ||  | ||||| || || |||||||| ||||| || | |||||| || || || ||||||||||||||||| || || |||||||| ||||||||     |    || ||    ||||   | | ||||| | ||||  |  |||    |  |  ||    || |      |                      
AAAAGGTCACACCAATGAAAAGAATTTTGTTGGACTTACTGTCAACAGTGAGTATATCGCCTGTGGCAGTGAAACAAACGAGGTGTTTGTGTATCACAAGgtaacattctgcttgaacagagtgttaatattttgtg-acttgctgtggatgactattggactttggatgtcaaaaggaaaggacttaaggtgaatttttt

upper sequence: GLYMA14G05430.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S25_325V6.1 (Physcomitrella patens), 5'ss of exon 12
CAAAGGCCATGCAAATGAGAAAAACTTTGTTGGCCTTACAGTAAGCAGTGAATACATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTGTGTACCACAAGgttt--------gtggttttcaatcatg--tgtcgttt------tcttgtgcatttgccttttatggta-------ctgaggattcaactgcccttttcag-------------------------------------------------------------
|| ||| ||| | ||||| || || ||||| || || || ||||  | ||| |||||||| || ||||||||||| ||||| ||| |||||||||| ||||| |         || | |   ||| |   ||| || |      | |  ||  |||   || ||||||         ||    || || ||||  ||| |                                                              
CAGAGGACATACCAATGAAAAGAATTTTGTAGGTCTGACTGTAAATAATGACTACATTGCTTGCGGCAGTGAAACGAATGAGGTCGTTGTGTACCATAAGgtatttctacaaatgatatcacatccttgctgtggtgtaggaagtgtgttgtgttttagttctatggtgaattttgttggacgttgaaatgccactttaaacaaactgttttcctccgactgggaacattttatctcagatatttggtggtgttaatcacag

upper sequence: GLYMA14G05430.1 (Glycine max), 5'ss of exon 12
lower sequence: EFJ28584 (Selaginella moellendorffii), 5'ss of exon 12
CAAAGGCCATGCAAATGAGAAAAACTTTGTTGGCCTTACAGTAAGCAGTGAATACATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTGTGTACCACAAGgtttgtggttttcaatcatgtgtcgttttcttgtgcatttgccttttatggtactgaggattcaactgcccttttcag
|| ||||||||| || ||||| |||||||| ||| | ||||| | ||| || ||||||||||| || |||||||| || |||||| | ||||| ||||||||  ||   ||| | | || | | |       | | ||    ||   | | |  ||    ||    ||       |||
CACAGGCCATGCTAACGAGAAGAACTTTGTAGGCTTGACAGTTAACAGCGAGTACATTGCGTGCGGTAGTGAAACGAACGAAGTCGTGGTGTATCACAAGgtaagtccatttgattgat-tttagagaaaaagagaatcaatct--gaggcttttg----tttgtttgttgcgagcag

upper sequence: GLYMA14G05430.1 (Glycine max), 5'ss of exon 12
lower sequence: EFJ20512 (Selaginella moellendorffii), 5'ss of exon 12
CAAAGGCCATGCAAATGAGAAAAACTTTGTTGGCCTTACAGTAAGCAGTGAATACATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTGTGTACCACAAGgtttgtggttttcaatcatgtgtcgttttcttgtgcatttgccttttatggtactgaggattcaactgcccttttcag
|| ||||||||| || ||||| |||||||| ||| | ||||| | ||| || ||||||||||| || |||||||| || |||||| | ||||| ||||| ||  ||   ||| | | || | | |       | | ||    ||   | | |  ||    ||    ||       |||
CACAGGCCATGCTAACGAGAAGAACTTTGTAGGCTTGACAGTTAACAGCGAGTACATTGCGTGCGGTAGTGAAACGAACGAAGTCGTGGTGTATCACAAAgtaagtccatttgattgat-tctagagaaaaagagaatcaatct--gaggcttttg----tttgtttgttgcgagcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524553|gb|BU083364.1|BU083364
EST:     AATACATTGCCTGTGGCAGTGAAACAAATGAAGTCTTTGTGTACCACAAG                         GAAATCTCGAGACCTTTGACTTGCCACAGATTTGGGTCCCCTGATATGGAT
genomic: AATACATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTGTGTACCACAAGgtttgtggtt ... cccttttcagGAAATCTCGAGACCTTTGACTTGCCACAGATTTGGGTCCCCTGATATGGAT