Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCCATTGTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACTCGTGCAAGTCGAGAGgtgagacatttctgagtttgtctttaagttatgatttatgaattttttcaagtcttccatgcttcaaactttgtctttctagcgtttaatcaccttttcc...

Basic information

species Glycine max
transcript GLYMA14G03780.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03780.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G13370.1 (Arabidopsis thaliana), 5'ss of exon 13
TGTTCCATTGTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACTCGTGCAAGTCGAGAGgtgagacatttctgagtttgtctttaagttatgatttatgaattttttcaagtcttccatgcttcaaactttgtctttctagcgtttaatcaccttttcc
||| || ||||| ||  || | |||||||| |||||||| || ||||||||||| |  |||||||| ||  |||||||||| || || || ||||||||||||||| |      |  |  | || | |||||   || | |   | |||| |   |  |    | | |  |    | |||| |      |  | ||| | 
TGTGCCTTTGTCAACACTAGCTAATTGGGCTAAAGAATTTAGAAAGTGGCTTCCCGGCATGAATATAATAGTATATGTTGGCACCCGGGCTAGTCGAGAGgtgagaaacaaaacaaatgatgttcatgttatagcttctaataatcttcagggtgttaagctcttatatctctgttgtctatctaaatctttcatttact

upper sequence: GLYMA14G03780.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 12
TGTTCCATTGTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACTCGTGCAAGTCGAGAGgtgagacatttctgagtttgtctttaagttatgatttatgaattttttcaagtcttccatgctt-caaactttgtctttctagcgtttaatcaccttttcc-
||| ||||| || ||||||||||| ||||| |||||||||| |||||||||||||||  ||||| | ||  | |||||||| || ||||| || ||||||||||| |||   |    |||  |    |||    || ||    | |    | |  |   || ||   | ||||| | |          |||  ||   |   
TGTACCATTATCGACTTTATCAAACTGGGCAAAAGAATTCAAGAAGTGGCTTCCTGACTTGAATGTCATTGTTTATGTTGGGACCCGTGCTAGCCGAGAGgtgagtcatactttgtattgggt--gggttgatgttgatatgctgtcaggatttatagttgtttgttatctttggcatgtacagaaagaattgccccctggc

upper sequence: GLYMA14G03780.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S317_10V6.1 (Physcomitrella patens), 5'ss of exon 13
TGTTCCATTGTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACTCGTGCAAGTCGAGAGgtgagacatttctgagtttgtctttaagttatgatttatgaattttttcaagtcttccatgcttcaaactttgtctttctagcgtttaatcaccttttcc-------
||| ||| | |||||  |  | |||||||||||||||||  |||||||| | |||||||||||| |  |  | ||||| || |  || || ||||||||||| || | | |  || ||    ||||  ||||  ||| |   ||| || |  | ||  ||    |||  |||||| || |     ||    ||   |          
TGTACCACTCTCCACCATCACCAATTGGGCCAAAGAATTTCGGAAGTGGTTACCTGATATGAATGTAGTTGTTTATGTGGGCAACCGAGCTAGTCGAGAGgtaag-cgtcttagatttgcagtttattttattctttttatttttcttta--ttttaaat----caatttttgtccttttgcaactttgatacgaatgtttggctca