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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTAAACACATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCTAAAACAGgttagtatataattgtgcacaattattattgatatattttttatgaggctcgagaattcactggtgacattataatcatatggttttatggttttatgat...

Basic information

species Glycine max
transcript GLYMA14G03200.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03200.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os05g29010.2 (Oryza sativa), 5'ss of exon 12
GTTTCTAAACACATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCTAAAACAGgttagtatataattgtgcacaattattattgatatattttttatgaggctcgagaattcactggtgac-attataatcatatggttttatggttttatgat-
|||||||| ||||||||||||||||| |||||||| || ||  |||| || || ||||||||| |   || | |      |  || || || || |   |   ||   |  |  | |||| |  ||  || |  |    ||    | ||  |  |     
GTTTCTAAGCACATGAATCATTTGCTGAAAGCACCCTTTTGCATACACCCGAAGACAGgttag-acccaagtatatttcctattttttcatctaatgaatg-aagatacttgtttgcactagaaactgtttttgttggctgtccgtgtgtatacacttcg

upper sequence: GLYMA14G03200.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G41880.1 (Arabidopsis thaliana), 5'ss of exon 13
GTTTCTAAACACATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCTAAAACAGgttagtat-ataattgtgcacaattattat-tgatatattttttatgaggctcgagaattcactggtgacattataatcatatggttttatggttttatgat
||||| ||||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||||   | | ||  ||      |  |||  |   |  || ||  | | |   || | | ||   |      || |   |  | |||||||  |          
GTTTCAAAACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAGgtccctttcattgtttcttgaatatatcctaccaggtaattactctcatattc-atacttagttcaatgtatgaatgttgtctggttttcag----------

upper sequence: GLYMA14G03200.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv02s0025g01350.t01 (Vitis vinifera), 5'ss of exon 12
GTTTCTAAACACATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCTAAAACAGgttagtat--ataattgtgcacaattattattgatatattttttatgaggctcgagaattcactggtgacattataatcatatggttttatggttttatgat
||||| ||||||||||| |||||||| || |||||||| ||||| || || ||||||||||||  |  | |||  |    | |||| |   ||  || |   |||| |   || |||    |  ||  |   |  ||   |     ||  | || |  | 
GTTTCAAAACACATGAACCATTTGCTAAAGGCACCATTTTGTGTGCACCCAAAAACAGgttagggtccagaatatttgttacttatgaaatatgaatatac-atgatgtgggaaaatctgttattgggaagtttttctgtttagcataacgcttgaaaa-