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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgccatacttctgagtttgttgactgttgtttattgttttggctgcttcattgtttcatatatgcatatacaaaaccacaatatcttgaaccgtc...

Basic information

species Glycine max
transcript GLYMA14G02220.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02220.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv19s0090g01210.t01 (Vitis vinifera), 5'ss of exon 12
TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtt----tgtgccatacttctgagtttgttgactgttgtt-tattgttttggctgcttcattgtttcatatatgcatatacaaaaccacaatatc-ttgaaccgtc--------------------------------------------------
||| | || ||||| |||||||||||||| ||||| |||||| | |||||||||||||| || |||||||| ||||| || ||  | |  | |||||||    ||| | |  ||  | |  ||   |  || |||| |  | | |    ||  | ||||  | ||   |   | ||  ||||   |  ||| ||||||                                                      
TTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAGgttcgtctgttctaccctgttaaagtttgggcatgctgttgtcatttctcatttgggttattggcttattcctagctgtaagaaactg-atcatcattgaacaaaaaggaatggaaagcatgtataacttttttctttttcttccacattgtatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301996|gb|FG995166.1|FG995166
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|31457278|gb|CD399306.1|CD399306
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|5760885|gb|AI966248.1|AI966248
EST:     AACGTCAAAACCAAGAATATGATGAGGAATGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|31466922|gb|CD408950.1|CD408950
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|209705501|gb|BW673522.1|BW673522
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|31456589|gb|CD398617.1|CD398617
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|12773062|gb|BG237989.1|BG237989
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|7028072|gb|AW457855.1|AW457855
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|31306949|gb|CD392152.1|CD392152
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|8403114|gb|BE058748.1|BE058748
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: gi|10253204|gb|BE820970.1|BE820970
EST:     AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG                         GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT