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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgtacttttttttaaacttcatttcctctctaatcttgtgtgatcttgttctttgtgtaatgaaccaacaagttcttgctatttcttaaaaggaaaa...

Basic information

species Glycine max
transcript GLYMA13G43680.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os02g11840.1 (Oryza sativa), 5'ss of exon 3
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgtacttttttttaaacttcatttcctctctaatcttgtgtgatcttgttctttgtgtaatg-aaccaacaagttcttgctatttcttaaaaggaaaa
 ||||| || || ||||| ||||||||||||||   ||| ||||||||||||||||||||||| || || | ||| || || | ||| |||||||||||||||||||||     |    |||| |||  | | |  |  |   | |   |     |  |  |||| ||       | |      |||| ||    |   | 
ATCATTCGGGTCTGCACTTGAATTTGTTTGGTCAGTTGATGGAGAATATGCTGTCAGAGAAAGCACGTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgtactaccactgtcccttcttttaat-tatctttgtacatcagagtaggggtccttcaatgcaatgtgtgggctagaaaaatttattgggtgtgcac

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 12
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgtacttttttttaaacttcatttcctctctaatcttgtgtgatcttgttctttgtgtaatgaaccaacaagttcttgctatttcttaaaaggaaaa-
 ||||| || || ||||| ||||||||||||||   ||| |||||||| |||||||||||||| || || | ||| || || | ||| |||||||||||||||||||||      |   | |  |||    | |  |  |   | |   |     |  |  |||| |       |  || |  |  | |||  |||     
ATCATTCGGGTCTGCACTTGAATTTGTTTGGTCACTTGATGGAGAATACGCTGTCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgtactgcccactgccccttcttttaattatcgttgtacatcagagtaggggtccttcaatgcaatgtgtggggctagaaaaat-ttagtaggtgtgc

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os06g05180.2 (Oryza sativa), 5'ss of exon 12
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgtacttttttttaaacttcatttcctctctaatcttgtgtgatcttgttctttgtgtaatgaaccaacaagttcttgctatttcttaaaaggaaaa----
||||||||| || ||| |||| ||||||||||| || || ||||| |||||| |||| |||||||||||||  || || |||||||| |||   || ||||||||  |    ||        | |||||| |      ||   | |         | ||||       |  |||    |  | | |    | || | |      
GTCATTTGGATCTGCATTGGAGTTTGTTTGGTCATCAGAAGGAGAGTATGCTATCAGGGAAAGTACATCAAGAATAAAGATTTTCAGTAAATCATTTCAGgtttggcccacattgattgtagcctttccttttatgaatttgatcagtaaaactgtagtgtttcatttcttcaa----tcaccactctggagaatgcaccatct

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G124886_T02 (Zea mays), 5'ss of exon 12
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgtacttttttttaaacttcatttcctctctaatct--tgtgtgatcttgttctttgtgtaatgaaccaa--caagttcttgctatttcttaaaaggaaaa
 |||||||| || ||||| ||||||||||||||  |||| |||||||||||  |||||||||| || |||| ||| || |||| ||| ||||||||||||||||||     | |   |  |||   | ||| ||  |    ||| |  | | ||| | | | ||  |    |   |    |||  | |   | |  | ||    
ATCATTTGGGTCTGCACTTGAATTTGTTTGGTCAACTGATGGAGAATATGCCATCAGAGAAAGCACCTCAAGGATAAAGATTTACAGTAAAAATTTCCAGgtttgtttcaatataacatattccccttctccctggtacaatgttttgtttagttatatctataccgctgtaggcctgtctctaacaaacacctgtaggg----

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G141587_T05 (Zea mays), 5'ss of exon 12
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgta-cttttttttaaacttcatttcctctctaatcttgtgtgatcttgttctttgtgtaatgaaccaacaagttcttgctatttcttaaaaggaaaa
 |||||||| || ||||| ||||||||||||||  |||| |||||||||||  |||||||||| || || | ||| || || | ||| |||||||||||||||||   |  | |   | | |||| ||| ||    |    |  | |||| |||   || |   ||| |     ||                         
ATCATTTGGGTCTGCACTTGAATTTGTTTGGTCAACTGATGGAGAATATGCCATCAGAGAAAGCACCTCGAGGATAAAGATATACAGTAAAAATTTCCAGgtttgcctcgatataacatatttcacttcttcctgga----gcataatct-gttaactg-gagctgatcttttcag-------------------------

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 12
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgt-ttgtacttttttttaaacttcatttcctctctaatcttgtgtgatcttgttctttgtgtaatgaaccaacaagttcttgctatttcttaaaaggaaaa
||||||||| || |||||||||||||||||||| || || |||||||||||  | || |||||||||||||  || || |||||||| |||   || ||||| || || |||  ||||   ||  | ||      |       ||  |||  ||  ||   |||| |   ||    | | |    |||   |   | ||| 
GTCATTTGGATCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAGTAAATCATTTCAGgtattctagtttagtttattgtttctctctctatcagatgcaagtt-tctcatttcttccataattacgtaaaccttacctctggtttggcatctgtaaac

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 12
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgtacttttttttaaacttcatttcctctctaatcttgtgtgatcttgttctttgtgtaatgaaccaacaagttcttgctatttcttaaaaggaaaa------
 |||||||| || |||||||||||||||||||| || || |||||||||||  | || |||||||||||||  || || |||||||  |||   || |||||   |  | |  ||||   || |||   | ||||    | | | |  |  ||  |    |    |     ||  |  |   || ||    |||            
ATCATTTGGGTCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAGgtacatggtctgctttag--tttattgtttttcta----tatattaattgcttaatcagatgcaaatttctcatttcttccatagttacctaaacattgcctctgg

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 12
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 12
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgtacttttttttaaacttcatttcctctctaatcttgtgtgatcttgt-tctttgtgtaatgaaccaacaagttcttgctatttcttaaaaggaaaa----------------------------------------
|||||||||||| | |||||||||||||||||| || ||||| || | ||| || ||||||||  |||||||||||||||| || ||||||||||||||||||| ||  | |||||   ||   |   ||      |  |||   | | ||| ||| ||  |  || |  |  |  || ||| || |  | |    || |                                         
GTCATTTGGTTCTGGACTGGAATTTGTTTGGTCATCCGAGGGGGAGTGTGCGGTTAGAGAAAGCTCATCAAAGATTAAAATATTTAGCAAAAATTTCCAGgtttctaaatcttttt---ctctctgatctaagccgttctgttcaaccctgtatctatggttgttgga--agta--ttattgatactggtcatggagatagctatattcggatctggctcattcagaaaatacattttcag

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 12
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 16
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgtactttttttta--aacttcatttcctctctaatcttgtgtga---tcttgttctttgtgt-----------------aatgaaccaacaagttct--tgctatttcttaaaaggaaaa
||||||||| || || || |||||||||||||| ||||| || ||  |||||||||| |||||  |  ||||||| || || |||||||| |||||||||||||||| ||  ||||   |  ||| ||| |   || ||    | | |   | ||||| |||||||                 |||  || |||   | ||  | |  ||  ||||   | |  
GTCATTTGGCTCTGCGCTAGAATTTGTTTGGTCATCTGATGGGGAGCATGCTGTCAGGGAAAGCTCGACAAAGATCAAGATCTTCAGCAAGAATTTCCAGgtttgtaattccttttggcacgttccttttccgactgattaactctaaagcttttgttttttgtgtcttattctgttatctgaaatacactaacctatgctgatacccttgtttaatttgcag-

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 12
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 12
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgtactttttttta-aacttcatttcctctctaatcttgtgtgatcttgttctttgtgtaatgaaccaacaagttcttgctatttcttaaaaggaaaa-----------------------------------
 || ||||| || |  ||||||||||||||||| |||||||| |||| ||| || ||||||||  |||||||||| || || ||||| |||||||||||||||||   || |  |||   | | | |  |   ||| | |  ||   | |  ||||  |  | | |||    ||  | ||||| ||      |      |                                    
ATCTTTTGGGTCTGGCCTGGAATTTGTTTGGTCATCTGAGGGGGAATGTGCGGTTAGAGAAAGCTCATCAAAGATAAAGATATTCAGTAAAAATTTCCAGgtttgctattctcattatggccttact--catactattttgttggagtatgattctagggttgaagaaattgcagatgcttgcaatagagacagctattactggcttattatattaataaaaggtggtgttttcag

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 12
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgtacttttttttaaacttcatttcctctctaatcttgtgtgatcttgttctttgtgta-atgaaccaacaagttcttgc-tatttcttaaaaggaaaa----
||| |||||||| ||| |||||||||| ||||| || || || |||||||||||||||||||||||||||||| |||| |||||||| || |||||||||||||||      |      |||  |||| ||||| ||       |||   || |  | | || ||  |    || ||   ||  | | | |      |||||    
GTCTTTTGGTTCGGCATTGGAATTTGTATGGTCATCAGATGGTGAATATGCTGTCAGAGAAAGTACATCAAAGGTTAAGATTTTCAGTAAGAATTTCCAGgtttgtgtcccctc-----ctttgtttc-tctctgatgagaatagattaggtgcaatatatatatatatatgcatgtgtgtgtgtgtgtgtgctgctgaaaacatt

upper sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 12
GTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAAATTTCCAGgtttgtacttttttttaaacttcatttcctctctaatcttgtgtgatcttgttctttgtgtaa-tgaaccaacaa-gttcttgctatttcttaaaaggaaaa---
 |||||||| ||||| ||||||||||||||||| || || | |||||||||||| || ||||||||||||| |||||| |||||||||||||  ||||||||||  |  |  ||| ||| || |  | ||| | |  ||| | ||||   |   ||| |  ||   ||  | ||| | |  |  | || |  |   |   |    
ATCATTTGGCTCAGCGCTGGAATTTGTTTGGTCATCAGATGCAGAATATGCTGTGAGGGAAAGTACATCAAGGATTAAGATTTTCAGCAAAACATTCCAGgttttga--tcctttcaaagtttagattctcacga--cttat-tgatgggggcttttctccaagcaaattagcaatgcttcttttgttgcaaagttgtttatctt