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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAgtaagtcattcagagcatttattgaatatatagaagtgcatagttatggggtggggttatttccataaggtttactgcaaaatttgactttcggctttag...

Basic information

species Glycine max
transcript GLYMA13G42230.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42230.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv09s0002g01560.t01 (Vitis vinifera), 5'ss of exon 12
---GCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAgtaagtcattcagagcatttattgaatatatagaagtgcatagtta-tggggtggggttatttccataaggtttactgcaaaatttgactttcggctttag--
    ||||   |||| ||  | |||||||| |||||||| ||||||||||||||||| ||  || |  | |||  |||||      |||| |||||  |||| ||||||    ||   ||   |   ||||| |     | | || |||          | |    |   ||   | | ||| |  |  |  ||| |     |   
AACACCTGTAAGGCCGCCATCCCCAGTGTCAGATGGTTCATTCTATTTTCCAACTAATGTTCCTGCCATCCCACATATGC---ATGTGCCTGTGGGGGTTGGGgtaagtgcagcaagaca---aaccaatatgttttgttccttacttagctttcctcagcttgaacttcaaatctaagtgctatctaaggtttttgatgggacat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21887595|gb|BQ740808.1|BQ740808
EST:     CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGA                         ATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
genomic: CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
EST: gi|24136028|gb|BU926538.1|BU926538
EST:     CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGA                         ATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
genomic: CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
EST: gi|22930642|gb|BU547789.1|BU547789
EST:     CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGA                         ATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
genomic: CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
EST: gi|9205412|gb|BE331636.1|BE331636
EST:     CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGA                         ATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
genomic: CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
EST: gi|14205753|gb|BG839431.1|BG839431
EST:     CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGA                         ATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA
genomic: CTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAgtaagtcatt ... tggcttgcagATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTA