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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTTCTCTGCTTATTTTGTCATCCGCTGGTGGTTTCATTGGAATTTGGGTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAGgtaatactgatttttaagggttattatttctaatattttccacctaattgaattgatcactatcaagacacttgtcacatttagaacattgattcaatgcattctctttaagtcaatggaactaataaatggactgtgttgatgcag

Basic information

species Glycine max
transcript GLYMA13G41460.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209696677|gb|BW666946.1|BW666946
EST:     GTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAG                         AATTGGAACGGGATCAGGACCTTGGGAGTTTCTAAGGAGCTCATGAGTGCA
genomic: GTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAGgtaatactga ... gttgatgcagAATTGGAACGGGATCAGGACCTTGGGAGTTTCTAAGGAGCTCATGAGTGCA
EST: gi|209702018|gb|BW677925.1|BW677925
EST:     GTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAG                         AATTGGAACGGGATCAGGACCTTGGGAGTTTCTAAGGAGCTCATGAGTGCA
genomic: GTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAGgtaatactga ... gttgatgcagAATTGGAACGGGATCAGGACCTTGGGAGTTTCTAAGGAGCTCATGAGTGCA
EST: gi|19270283|gb|BM886539.1|BM886539
EST:     GTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAG                         AATTGGAACGGGATCAGGACCTTGGGAGTTTCTAAGGAGCTCATGAGTGCA
genomic: GTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAGgtaatactga ... gttgatgcagAATTGGAACGGGATCAGGACCTTGGGAGTTTCTAAGGAGCTCATGAGTGCA
EST: gi|51341966|gb|CO983283.1|CO983283
EST:     GTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAG                         AATTGGAACGGGATCAGGACCTTGGGAGTTTCTAAGGAGCTCATGAGTGCA
genomic: GTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAGgtaatactga ... gttgatgcagAATTGGAACGGGATCAGGACCTTGGGAGTTTCTAAGGAGCTCATGAGTGCA
EST: gi|192298304|gb|FG992094.1|FG992094
EST:     GTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAG                         AATTGGAACGGGATCAGGACCTTGGGAGTTTCTAAGGAGCTCATGAGTGCA
genomic: GTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAGgtaatactga ... gttgatgcagAATTGGAACGGGATCAGGACCTTGGGAGTTTCTAAGGAGCTCATGAGTGCA
EST: gi|16106302|gb|BI894042.1|BI894042
EST:     GTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAG                         AATTGGAACGGGATCAGGACCTTGGGAGTTTCTAAGGAGCTCATGAGTGCA
genomic: GTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAGgtaatactga ... gttgatgcagAATTGGAACGGGATCAGGACCTTGGGAGTTTCTAAGGAGCTCATGAGTGCA