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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAAGCATATGCTTGCTATTGATTGGAAATGCTGGAGATTATATCTTAAATCTTCATCAGCACATTCCATAACCATTCAAATGCTTGGGAGAGTTGCTGgtaatcttattttgtatcgctgaatgttgacatatttttaattaaaagatttaatattctagtttatatttttatttactactttcttttgcttgtgcag

Basic information

species Glycine max
transcript GLYMA13G40010.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40010.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os10g33930.1 (Oryza sativa), 5'ss of exon 1
GTAAAGCATATGCTTGCTATTGATTGGAAATGCTGGAGATTATATCTTAAATCTTCATCAGCACATTCCATAACCATTCAAATGCTTGGGAGAGTTGCTGgtaa-tcttattttgtatcgctgaatgttgacatatttttaattaaaagatttaatattctagtttatatttttatttactactttcttttgcttgt--gcag
|| ||||||||||||||||| |||||||||| |||||  |  |||||     |  |||| ||| |   ||| || || |  ||||| || ||||| || || || |||| |  || |||  | ||   |  | |  | |   |||  | | || ||  |  |  || |  | |||||     ||  |||    || |  ||||
GTGAAGCATATGCTTGCTATAGATTGGAAATTCTGGAAGTCTTATCTGTTTACCGCATCTGCAAAACACATCACTATACGCATGCTAGGAAGAGTAGCAGgcaagtcttgtgatgcatcaataaaccattgcctgatgtgttttatcaaacttcattctgcaaattttcatattattctgagctaacttacctttataagcag

upper sequence: GLYMA13G40010.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv06s0004g02720.t01 (Vitis vinifera), 5'ss of exon 12
GTAAAGCATATGCTTGCTATTGATTGGAAATGCTGGAGATTATATCTTAAATCTTCATCAGCACATTCCATAACCATTCAAATGCTTGGGAGAGTTGCTGgtaatct----tattttgtatcgctgaatgttgaca-tatttttaattaaaagatttaatattctagtttatatttttatttactacttt---cttttgcttgtgcag
||||| || |||||||||||||| ||||||| ||||||||  |||||  || | || ||||| |  || |||||||| |  |||||||||||||||||||||| | |    || || |  |   || || || ||| |  |||    | | |  ||||  | | | || | ||||   ||  |   || |    ||| || | |||||
GTAAAACACATGCTTGCTATTGACTGGAAATTCTGGAGATCTTATCTACAAACATCTTCAGCTCGATCTATAACCATCCGGATGCTTGGGAGAGTTGCTGgtagtttatgctaattggattttgtgtattttaacaatgctttcttcttataattttatgaattttgtctgtattaaaataaaaacctctacattttggcatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19452839|gb|BM954249.1|BM954249
EST:     ATCTTCATCAGCACATTCCATAACCATTCAAATGCTTGGGAGAGTTGCTG                         CATTACGGGAATTATTTAAAGCTAAACTAGGAAATTGTTCTTCATCTGATT
genomic: ATCTTCATCAGCACATTCCATAACCATTCAAATGCTTGGGAGAGTTGCTGgtaatcttat ... gcttgtgcagCATTACGGGAATTATTTAAAGCTAAACTAGGAAATTGTTCTTCATCTGATT