1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAGAACAAACGGGATTTCTTTGTTTTTCTTGTTCTTGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAAgtatgtgtctgctgagacataagagttactgaattacattgttcattttactgcaatttaaactgctgatgaaaaataaatttctgcgtgcag
species | Glycine max |
transcript | GLYMA13G23230.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGTTCTTGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAA GAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGTEST: gi|15814634|gb|BI786909.1|BI786909
genomic: TGTTCTTGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAAgtatgtgtct ... ctgcgtgcagGAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGT
EST: TGTTCTTGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAA GAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGTEST: gi|298180896|gb|HO022335.1|HO022335
genomic: TGTTCTTGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAAgtatgtgtct ... ctgcgtgcagGAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGT
EST: TGTTCTTGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAA GAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGTEST: gi|58018760|gb|CX705502.1|CX705502
genomic: TGTTCTTGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAAgtatgtgtct ... ctgcgtgcagGAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGT
EST: AAGTTTCAGCAATG-TGGGTACTGGGTGGAGTTTGTCTTACAA GAGTGTTAACTGATCCACTTGCACNTCAGTCATTTGGGGCATGGATTCAGT
genomic: AAGTTTCAGCAATGTTGGTTACT-GGTGGAGTTTGTCTTACAAgtatgtgtct ... ctgcgtgcagGAGTGTTAACTGATCCACTTGCACCTCAGTCATTTGGGGCATGGATTCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAACAAACGGGATTTCTTTGTTTTTCTTGTTCTTGAAGTTTCAGCAATGTTGGTTACTGGTGGAGTTTGTCTTACAAgtatgtgtctgctgagacataagagttactgaattacattgttcattttactgcaatttaaactgctgatgaaaaataaatttctgcgtgcag
- - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG