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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGACATCTTGCAAACTATTCAACGCTGTACTGCTGTTGACCGCTCCCCTCCAACCCTTATGTGTACCCTAGGGGTTGCAAATTCTATTTTCAAGCAGgtaaatttcaaatgatgagcctgacataaatcacagttttttatattattgactgctatgatcaacgatatttggagttgttgctaaatagtatttggaatcatacttgtctttttttttctcctcttcag

Basic information

species Glycine max
transcript GLYMA12G37070.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 12
CTTGGACATCTTGCAAACTATTCAACGCTGTACTGCTGTTGACCGCTCCCCTCCAACCCTTATGTGTACCCTAGGGGTTGCAAATTCTATTTTCAAGCAGgtaaatttcaaatgatgagcctgacataaatcacagttttttatattattgactgctatgatcaacgatatttggagttgttgctaaatagtatttggaatcatacttgtctttttttttctcctcttcag
    || ||  ||||||| ||||||||||||||||||||||| || ||  | || |||||||||||||| || |   | |||||  | ||| |||||||||||  |   ||| |            ||  | ||  || |  ||| ||||   || | |||  | |   ||||  | |  ||   | |  |  ||    |||||   | |||                   
TACTGAAATTCTGCAAACAATTCAACGCTGTACTGCTGTTGATCGTTCTGCACCGACCCTTATGTGTACTCTTGCAATCGCAAACGCAATTCTCAAGCAGgtaggt---aaaag------------tagtttact-ttctcaataatattagatgtt-tgaaaatcttaattttcaatatttttcatagtgccttctccatcatttctttctag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796790|gb|AW782184.1|AW782184
EST:     CTCCAACCCTTATGTGTACCCTAGGGGTTGCAAATTCTATTTTCAAGCAG                         TATGGAGTAGAATTTGTAGCTGAGCATGTTCTTCCATTGCTTATACCCCTG
genomic: CTCCAACCCTTATGTGTACCCTAGGGGTTGCAAATTCTATTTTCAAGCAGgtaaatttca ... tcctcttcagTATGGAGTAGAATTTGTAGCTGAGCATGTTCTTCCATTGCTTATACCCCTG