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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATGCCAACGGAAATACACATGTTTCTGATCTCACAGTAGTGGATGTTCAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagttcataaggttcctttataggctttctagtgcttaattctatgtggctgtgtctactacctcattaagacacaatgaaggaacttgcaattt...

Basic information

species Glycine max
transcript GLYMA12G34330.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193396363|gb|FK362761.1|FK362761
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208247247|gb|GE047491.1|GE047491
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208151533|gb|GD950402.1|GD950402
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193393015|gb|FK360225.1|FK360225
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAACGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|207777173|gb|GD748268.1|GD748268
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208038614|gb|GD833310.1|GD833310
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|207845067|gb|GD815350.1|GD815350
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAGGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193573368|gb|FK530105.1|FK530105
EST:     ATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATAGAACAATCTTCTAGAAGTCATTTTG
genomic: ATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAAT-GAACAATCTTCTAGAAGTCATTTTG
EST: gi|193656146|gb|FK603276.1|FK603276
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208026158|gb|GD825704.1|GD825704
EST:     AGGTTGCATTTTCTTTTAAATCAAGCTGACAAATAGCAG                         ATCTGGTAGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTT
genomic: AGGTTGCA-TTTCTTTTAAATCAAGCTG-CAAATAGCAGgtaattagtt ... ttccttttagATCT-GT-GGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTT
EST: gi|193425309|gb|FK387826.1|FK387826
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTT-AAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAACGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208143954|gb|GD941571.1|GD941571
EST:     CAGNGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193544381|gb|FK501194.1|FK501194
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|207825869|gb|GD797384.1|GD797384
EST:     CTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193390545|gb|FK355009.1|FK355009
EST:     AGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: AGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208162187|gb|GD965298.1|GD965298
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208160909|gb|GD965547.1|GD965547
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193445024|gb|FK405800.1|FK405800
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208244998|gb|GE038983.1|GE038983
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193362738|gb|FK327858.1|FK327858
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAAGATGAATGAACAATCTTCTAGAAGTCATTTTG
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCA-GATGAATGAACAATCTTCTAGAAGTCATTTTG
EST: gi|193322526|gb|FK289448.1|FK289448
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208339126|gb|GE138874.1|GE138874
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|207784291|gb|GD758938.1|GD758938
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAA
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAA
EST: gi|193407546|gb|FK370290.1|FK370290
EST:     CAGAGTGTAAAANAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193727526|gb|FK664128.1|FK664128
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATAGAAATGAACAATCTTCTAGAAGTCATTCT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGAT-GAA-TGAACAATCTTCTAGAAGTCATTTT
EST: gi|193362942|gb|FK327488.1|FK327488
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208162503|gb|GD962296.1|GD962296
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208172418|gb|GD966739.1|GD966739
EST:     AGAGTGTAAAAGAGGTTGCATTTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: AGAGTGTAAAAGAGGTTGCA-TTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208153346|gb|GD945649.1|GD945649
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTT-GT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208305002|gb|GE101877.1|GE101877
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208274058|gb|GE071050.1|GE071050
EST:     CAGAGTGTAAAAGAGGTTGCATTCCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208154929|gb|GD954862.1|GD954862
EST:     AGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAAGCAG                         ATCTGTGGGAAAAACTACNGATGAATGAACAATCTTCTAGAAGTCATTTT
genomic: AGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATA-GCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACT-CAGATGAATGAACAATCTTCTAGAAGTCATTTT
EST: gi|208254649|gb|GE053533.1|GE053533
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCCTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193653661|gb|FK594339.1|FK594339
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCACTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208248484|gb|GE047145.1|GE047145
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCT
EST: gi|208262983|gb|GE062445.1|GE062445
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAA
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAA
EST: gi|208163041|gb|GD965677.1|GD965677
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCTG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208304721|gb|GE103556.1|GE103556
EST:     CAGAGTGTAAAAGAGGTCGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208257918|gb|GE050949.1|GE050949
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|207680282|gb|GD661754.1|GD661754
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208332176|gb|GE127727.1|GE127727
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193391613|gb|FK354174.1|FK354174
EST:     TAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: TAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193619875|gb|FK567140.1|FK567140
EST:     AGAGTGTAAAAGAGGTTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: AGAGTGTAAAAGAGG-TTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193361005|gb|FK323857.1|FK323857
EST:     TAAAAGA-GTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: TAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|207758064|gb|GD729230.1|GD729230
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193516215|gb|FK473897.1|FK473897
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193527386|gb|FK487600.1|FK487600
EST:     GCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: GCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|207844076|gb|GD816081.1|GD816081
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208151123|gb|GD946072.1|GD946072
EST:     TAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: TAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193644630|gb|FK589102.1|FK589102
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193559548|gb|FK512975.1|FK512975
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208141285|gb|GD938287.1|GD938287
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193396509|gb|FK363691.1|FK363691
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193339800|gb|FK303187.1|FK303187
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193589764|gb|FK544680.1|FK544680
EST:     CAGAGTGTAAAAGAGGTTGCGTTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193680421|gb|FK624355.1|FK624355
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208267414|gb|GE063677.1|GE063677
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACT
EST: gi|193401661|gb|FK366334.1|FK366334
EST:     GAGTGTAAAAAGAAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAACAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: GAGTGT-AAAAG-AGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193559060|gb|FK511717.1|FK511717
EST:     CAGAGTGTAAAAGAGGATGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|208131508|gb|GD932045.1|GD932045
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
EST: gi|193314386|gb|FK280145.1|FK280145
EST:     CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAACAG                         ATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT
genomic: CAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagtt ... ttccttttagATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGATGCCAACGGAAATACACATGTTTCTGATCTCACAGTAGTGGATGTTCAGAGTGTAAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGgtaattagttcataaggttcctttataggctttctagtgcttaattctatgtggctgtgtctactacctcattaagacacaatgaaggaacttgcaattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC