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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGGATCAGTTGCTACTGTTAACAATCTCATTGCCTGCACTGTTGAGAGAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAGgtaagaacgccacactatcctattttttttcacactttcttaactactaaatgagtcttatatctcctaagtatccaattaattaacactcttatctaaa...

Basic information

species Glycine max
transcript GLYMA12G32050.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209704661|gb|BW656653.1|BW656653
EST:     GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAG                         TTTAGAAGAAGGATAAAGGGGTGCATTGCATTTTGGACAAATGGGAGGTGT
genomic: GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAGgtaagaacgc ... ttggatgcagTTTAGAAGAAGGATAAAGGGGTGCATTGCATTTTGGACAAATGGGAGGTGT
EST: gi|208024040|gb|GD823712.1|GD823712
EST:     GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAG                         TTTAGAAGAAGGATAAAGGGG
genomic: GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAGgtaagaacgc ... ttggatgcagTTTAGAAGAAGGATAAAGGGG
EST: gi|193701959|gb|FK635933.1|FK635933
EST:     GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAG                         TTTAGAAGAAGGATAAAGGGGTGCATTGC
genomic: GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAGgtaagaacgc ... ttggatgcagTTTAGAAGAAGGATAAAGGGGTGCATTGC
EST: gi|120532424|gb|EH260557.1|EH260557
EST:     GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAG                         TTTAGAAGAAGGATAAAG
genomic: GAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAGgtaagaacgc ... ttggatgcagTTTAGAAGAAGGATAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTGGATCAGTTGCTACTGTTAACAATCTCATTGCCTGCACTGTTGAGAGAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGACCTAATGGATTATAGgtaagaacgccacactatcctattttttttcacactttcttaactactaaatgagtcttatatctcctaagtatccaattaattaacactcttatctaaa

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